Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 pRNA.6-201ENST00000610482 90 ntBASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 pRNA.5-201ENST00000612139 90 ntBASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 pRNA.11-201ENST00000618423 90 ntBASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 pRNA.13-201ENST00000619112 90 ntBASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNRNP40Q96DI7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 TSPY26P-201ENST00000476365 1326 ntBASIC20.53■□□□□ 0.88
SNRNP40Q96DI7 AL121749.1-202ENST00000609313 2153 ntBASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SNRNP40Q96DI7 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.52■□□□□ 0.87
SNRNP40Q96DI7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.52■□□□□ 0.87
SNRNP40Q96DI7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 SLC47A1P1-202ENST00000449666 945 ntBASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 DUX4L2-201ENST00000561772 1275 ntBASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 DUX4L6-201ENST00000626483 1275 ntBASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 DUX4L1-201ENST00000627662 1275 ntBASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 DUX4L8-201ENST00000629013 1275 ntBASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 DUX4L3-201ENST00000630187 1275 ntBASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 DUX4L7-201ENST00000630678 1275 ntBASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 DUX4L5-201ENST00000630834 1275 ntBASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SNRNP40Q96DI7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 AC092437.1-201ENST00000624794 1048 ntBASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNRNP40Q96DI7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.49■□□□□ 0.87
SNRNP40Q96DI7 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNRNP40Q96DI7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SNRNP40Q96DI7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.49■□□□□ 0.87
SNRNP40Q96DI7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SNRNP40Q96DI7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.48■□□□□ 0.87
SNRNP40Q96DI7 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SNRNP40Q96DI7 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.47■□□□□ 0.87
SNRNP40Q96DI7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SNRNP40Q96DI7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.47■□□□□ 0.87
SNRNP40Q96DI7 AL358852.1-201ENST00000623174 1268 ntBASIC20.47■□□□□ 0.87
SNRNP40Q96DI7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SNRNP40Q96DI7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms