Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.85■■□□□ 1.09
LSM1O15116 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LSM1O15116 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LSM1O15116 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.84■■□□□ 1.09
LSM1O15116 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
LSM1O15116 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.84■■□□□ 1.09
LSM1O15116 AC120024.1-201ENST00000562672 995 ntBASIC21.84■■□□□ 1.09
LSM1O15116 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.84■■□□□ 1.09
LSM1O15116 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LSM1O15116 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LSM1O15116 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
LSM1O15116 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
LSM1O15116 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LSM1O15116 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
LSM1O15116 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LSM1O15116 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LSM1O15116 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.83■■□□□ 1.09
LSM1O15116 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LSM1O15116 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LSM1O15116 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.83■■□□□ 1.09
LSM1O15116 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.83■■□□□ 1.09
LSM1O15116 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LSM1O15116 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LSM1O15116 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LSM1O15116 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.83■■□□□ 1.09
LSM1O15116 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
LSM1O15116 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
LSM1O15116 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
LSM1O15116 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
LSM1O15116 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LSM1O15116 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LSM1O15116 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.82■■□□□ 1.08
LSM1O15116 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LSM1O15116 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
LSM1O15116 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.82■■□□□ 1.08
LSM1O15116 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.82■■□□□ 1.08
LSM1O15116 AC004987.1-201ENST00000428627 508 ntBASIC21.82■■□□□ 1.08
LSM1O15116 ATP5G2P3-201ENST00000429083 425 ntBASIC21.82■■□□□ 1.08
LSM1O15116 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LSM1O15116 AC079834.2-201ENST00000609776 1949 ntBASIC21.82■■□□□ 1.08
LSM1O15116 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LSM1O15116 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LSM1O15116 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LSM1O15116 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LSM1O15116 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LSM1O15116 PVT1_1.1-201ENST00000615125 194 ntBASIC21.81■■□□□ 1.08
LSM1O15116 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LSM1O15116 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LSM1O15116 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LSM1O15116 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
LSM1O15116 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
LSM1O15116 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.8■■□□□ 1.08
LSM1O15116 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.8■■□□□ 1.08
LSM1O15116 AF131216.4-201ENST00000638924 1588 ntBASIC21.8■■□□□ 1.08
LSM1O15116 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LSM1O15116 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LSM1O15116 BHLHE23-202ENST00000612929 1109 ntBASIC21.8■■□□□ 1.08
LSM1O15116 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LSM1O15116 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LSM1O15116 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.79■■□□□ 1.08
LSM1O15116 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.79■■□□□ 1.08
LSM1O15116 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
LSM1O15116 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LSM1O15116 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LSM1O15116 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LSM1O15116 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.78■■□□□ 1.08
LSM1O15116 AC074183.2-201ENST00000623112 922 ntBASIC21.78■■□□□ 1.08
LSM1O15116 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LSM1O15116 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LSM1O15116 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LSM1O15116 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
LSM1O15116 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LSM1O15116 KRT18P24-201ENST00000344739 1156 ntBASIC21.77■■□□□ 1.08
LSM1O15116 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.77■■□□□ 1.08
LSM1O15116 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.77■■□□□ 1.08
LSM1O15116 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LSM1O15116 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
LSM1O15116 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LSM1O15116 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LSM1O15116 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LSM1O15116 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
LSM1O15116 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms