Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC138932.3-201ENST00000567634 1902 ntBASIC23.88■■□□□ 1.41
HMGA1P17096 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
HMGA1P17096 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.88■■□□□ 1.41
HMGA1P17096 DUX4L19-201ENST00000557448 1267 ntBASIC23.88■■□□□ 1.41
HMGA1P17096 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
HMGA1P17096 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.88■■□□□ 1.41
HMGA1P17096 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
HMGA1P17096 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
HMGA1P17096 C17orf82-201ENST00000623772 1530 ntBASIC23.88■■□□□ 1.41
HMGA1P17096 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
HMGA1P17096 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
HMGA1P17096 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.88■■□□□ 1.41
HMGA1P17096 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
HMGA1P17096 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.88■■□□□ 1.41
HMGA1P17096 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.87■■□□□ 1.41
HMGA1P17096 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
HMGA1P17096 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.87■■□□□ 1.41
HMGA1P17096 AC142381.3-201ENST00000568208 1670 ntBASIC23.87■■□□□ 1.41
HMGA1P17096 AC099791.2-201ENST00000605725 427 ntBASIC23.87■■□□□ 1.41
HMGA1P17096 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.87■■□□□ 1.41
HMGA1P17096 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
HMGA1P17096 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.86■■□□□ 1.41
HMGA1P17096 ALDH1A3-203ENST00000557963 1670 ntBASIC23.86■■□□□ 1.41
HMGA1P17096 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGA1P17096 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGA1P17096 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
HMGA1P17096 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
HMGA1P17096 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.85■■□□□ 1.41
HMGA1P17096 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.85■■□□□ 1.41
HMGA1P17096 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGA1P17096 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
HMGA1P17096 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.85■■□□□ 1.41
HMGA1P17096 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.85■■□□□ 1.41
HMGA1P17096 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGA1P17096 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
HMGA1P17096 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGA1P17096 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGA1P17096 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGA1P17096 SYT6-210ENST00000641643 1587 ntBASIC23.84■■□□□ 1.41
HMGA1P17096 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGA1P17096 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGA1P17096 EDA-201ENST00000338901 1233 ntBASIC23.84■■□□□ 1.41
HMGA1P17096 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.84■■□□□ 1.41
HMGA1P17096 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGA1P17096 AC142381.2-201ENST00000566120 298 ntBASIC23.84■■□□□ 1.41
HMGA1P17096 AC092171.4-201ENST00000609130 632 ntBASIC23.84■■□□□ 1.41
HMGA1P17096 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.84■■□□□ 1.41
HMGA1P17096 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.84■■□□□ 1.41
HMGA1P17096 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
HMGA1P17096 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGA1P17096 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGA1P17096 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGA1P17096 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGA1P17096 SERBP1P1-201ENST00000396021 1160 ntBASIC23.83■■□□□ 1.41
HMGA1P17096 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
HMGA1P17096 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.83■■□□□ 1.41
HMGA1P17096 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.4
HMGA1P17096 AC020928.2-201ENST00000588717 2197 ntBASIC23.82■■□□□ 1.4
HMGA1P17096 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGA1P17096 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGA1P17096 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.82■■□□□ 1.4
HMGA1P17096 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.82■■□□□ 1.4
HMGA1P17096 AL355001.2-201ENST00000620617 1191 ntBASIC23.82■■□□□ 1.4
HMGA1P17096 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGA1P17096 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGA1P17096 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGA1P17096 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
HMGA1P17096 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGA1P17096 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGA1P17096 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGA1P17096 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGA1P17096 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGA1P17096 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.8■■□□□ 1.4
HMGA1P17096 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGA1P17096 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
HMGA1P17096 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGA1P17096 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGA1P17096 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGA1P17096 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.8■■□□□ 1.4
HMGA1P17096 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGA1P17096 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HMGA1P17096 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HMGA1P17096 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
HMGA1P17096 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGA1P17096 ZNRF2P3-201ENST00000424200 374 ntBASIC23.79■■□□□ 1.4
HMGA1P17096 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.79■■□□□ 1.4
HMGA1P17096 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.78■■□□□ 1.4
HMGA1P17096 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGA1P17096 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.78■■□□□ 1.4
HMGA1P17096 AL136967.2-201ENST00000623968 743 ntBASIC23.78■■□□□ 1.4
HMGA1P17096 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.78■■□□□ 1.4
HMGA1P17096 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
HMGA1P17096 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGA1P17096 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.78■■□□□ 1.4
HMGA1P17096 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGA1P17096 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
HMGA1P17096 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGA1P17096 AC006455.2-201ENST00000429931 906 ntBASIC23.77■■□□□ 1.4
HMGA1P17096 MIR4767-201ENST00000582827 78 ntBASIC23.77■■□□□ 1.4
HMGA1P17096 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms