Protein–RNA interactions for Protein: O95238

SPDEF, SAM pointed domain-containing Ets transcription factor, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPDEFO95238 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPDEFO95238 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPDEFO95238 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.21■□□□□ 0.67
SPDEFO95238 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.21■□□□□ 0.67
SPDEFO95238 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.21■□□□□ 0.67
SPDEFO95238 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SPDEFO95238 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPDEFO95238 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPDEFO95238 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SPDEFO95238 SLC6A10P-202ENST00000431994 2058 ntBASIC19.2■□□□□ 0.66
SPDEFO95238 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.2■□□□□ 0.66
SPDEFO95238 AC137767.1-201ENST00000602918 1920 ntBASIC19.2■□□□□ 0.66
SPDEFO95238 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.2■□□□□ 0.66
SPDEFO95238 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SPDEFO95238 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19.2■□□□□ 0.66
SPDEFO95238 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPDEFO95238 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SPDEFO95238 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.19■□□□□ 0.66
SPDEFO95238 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SPDEFO95238 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SPDEFO95238 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
SPDEFO95238 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.19■□□□□ 0.66
SPDEFO95238 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.19■□□□□ 0.66
SPDEFO95238 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SPDEFO95238 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
SPDEFO95238 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SPDEFO95238 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.18■□□□□ 0.66
SPDEFO95238 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SPDEFO95238 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SPDEFO95238 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SPDEFO95238 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.17■□□□□ 0.66
SPDEFO95238 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPDEFO95238 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPDEFO95238 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPDEFO95238 RAP2CP1-202ENST00000605179 643 ntBASIC19.17■□□□□ 0.66
SPDEFO95238 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
SPDEFO95238 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPDEFO95238 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SPDEFO95238 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPDEFO95238 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SPDEFO95238 LINC00526-201ENST00000581067 1875 ntBASIC19.16■□□□□ 0.66
SPDEFO95238 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPDEFO95238 KRT18P10-201ENST00000388836 1287 ntBASIC19.16■□□□□ 0.66
SPDEFO95238 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SPDEFO95238 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPDEFO95238 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPDEFO95238 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPDEFO95238 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.16■□□□□ 0.66
SPDEFO95238 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SPDEFO95238 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPDEFO95238 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.15■□□□□ 0.66
SPDEFO95238 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SPDEFO95238 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SPDEFO95238 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPDEFO95238 AC026202.3-201ENST00000600805 1127 ntBASIC19.15■□□□□ 0.66
SPDEFO95238 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPDEFO95238 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPDEFO95238 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SPDEFO95238 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SPDEFO95238 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
SPDEFO95238 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.15■□□□□ 0.66
SPDEFO95238 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SPDEFO95238 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SPDEFO95238 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
SPDEFO95238 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SPDEFO95238 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SPDEFO95238 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SPDEFO95238 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.14■□□□□ 0.65
SPDEFO95238 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SPDEFO95238 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SPDEFO95238 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SPDEFO95238 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SPDEFO95238 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SPDEFO95238 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SPDEFO95238 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.13■□□□□ 0.65
SPDEFO95238 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SPDEFO95238 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.13■□□□□ 0.65
SPDEFO95238 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SPDEFO95238 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SPDEFO95238 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SPDEFO95238 HSD17B1P1-201ENST00000590052 955 ntBASIC19.13■□□□□ 0.65
SPDEFO95238 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms