Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.68■■□□□ 1.22
TRIM39Q9HCM9 AC131212.1-201ENST00000613771 668 ntBASIC22.68■■□□□ 1.22
TRIM39Q9HCM9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.68■■□□□ 1.22
TRIM39Q9HCM9 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TRIM39Q9HCM9 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
TRIM39Q9HCM9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM39Q9HCM9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM39Q9HCM9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
TRIM39Q9HCM9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM39Q9HCM9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TRIM39Q9HCM9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.67■■□□□ 1.22
TRIM39Q9HCM9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
TRIM39Q9HCM9 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.66■■□□□ 1.22
TRIM39Q9HCM9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 AL139125.2-201ENST00000623134 1869 ntBASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
TRIM39Q9HCM9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.64■■□□□ 1.22
TRIM39Q9HCM9 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
TRIM39Q9HCM9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC22.64■■□□□ 1.21
TRIM39Q9HCM9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.64■■□□□ 1.21
TRIM39Q9HCM9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TRIM39Q9HCM9 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TRIM39Q9HCM9 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRIM39Q9HCM9 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 AC141586.4-201ENST00000624558 1573 ntBASIC22.63■■□□□ 1.21
TRIM39Q9HCM9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRIM39Q9HCM9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 LINC01124-201ENST00000409786 2117 ntBASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 AC005703.6-201ENST00000623265 1329 ntBASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 AL356740.2-201ENST00000601559 647 ntBASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 AL117332.1-201ENST00000622628 974 ntBASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 LINC00543-201ENST00000567234 1845 ntBASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TRIM39Q9HCM9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 MIR3621-201ENST00000580529 85 ntBASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRIM39Q9HCM9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRIM39Q9HCM9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
TRIM39Q9HCM9 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRIM39Q9HCM9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRIM39Q9HCM9 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRIM39Q9HCM9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.59■■□□□ 1.21
TRIM39Q9HCM9 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRIM39Q9HCM9 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRIM39Q9HCM9 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRIM39Q9HCM9 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TRIM39Q9HCM9 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TRIM39Q9HCM9 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TRIM39Q9HCM9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TRIM39Q9HCM9 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.58■■□□□ 1.21
TRIM39Q9HCM9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.58■■□□□ 1.21
TRIM39Q9HCM9 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
TRIM39Q9HCM9 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
TRIM39Q9HCM9 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms