Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 U85056.1-201ENST00000616429 682 ntBASIC21.04■□□□□ 0.96
ZNF540Q8NDQ6 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
ZNF540Q8NDQ6 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF540Q8NDQ6 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF540Q8NDQ6 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF540Q8NDQ6 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF540Q8NDQ6 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF540Q8NDQ6 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF540Q8NDQ6 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF540Q8NDQ6 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
ZNF540Q8NDQ6 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
ZNF540Q8NDQ6 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF540Q8NDQ6 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 MED25-210ENST00000612854 801 ntTSL 5 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 MED25-214ENST00000622402 642 ntTSL 5 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF540Q8NDQ6 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF540Q8NDQ6 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 TSPY13P-201ENST00000338964 914 ntBASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF540Q8NDQ6 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 AL033527.3-201ENST00000566366 1196 ntBASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.97■□□□□ 0.95
ZNF540Q8NDQ6 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 C1orf229-201ENST00000623686 2258 ntBASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms