Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
USB1Q9BQ65 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.36■□□□□ 0.85
USB1Q9BQ65 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
USB1Q9BQ65 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.35■□□□□ 0.85
USB1Q9BQ65 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
USB1Q9BQ65 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USB1Q9BQ65 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USB1Q9BQ65 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USB1Q9BQ65 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USB1Q9BQ65 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.35■□□□□ 0.85
USB1Q9BQ65 MIR6722-201ENST00000617286 78 ntBASIC20.35■□□□□ 0.85
USB1Q9BQ65 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.35■□□□□ 0.85
USB1Q9BQ65 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
USB1Q9BQ65 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
USB1Q9BQ65 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.34■□□□□ 0.85
USB1Q9BQ65 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.34■□□□□ 0.85
USB1Q9BQ65 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USB1Q9BQ65 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USB1Q9BQ65 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USB1Q9BQ65 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USB1Q9BQ65 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USB1Q9BQ65 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USB1Q9BQ65 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USB1Q9BQ65 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USB1Q9BQ65 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USB1Q9BQ65 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USB1Q9BQ65 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USB1Q9BQ65 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USB1Q9BQ65 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.32■□□□□ 0.84
USB1Q9BQ65 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USB1Q9BQ65 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.32■□□□□ 0.84
USB1Q9BQ65 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.32■□□□□ 0.84
USB1Q9BQ65 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USB1Q9BQ65 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.32■□□□□ 0.84
USB1Q9BQ65 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.31■□□□□ 0.84
USB1Q9BQ65 AC133561.1-201ENST00000568600 2415 ntBASIC20.31■□□□□ 0.84
USB1Q9BQ65 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USB1Q9BQ65 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USB1Q9BQ65 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USB1Q9BQ65 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.31■□□□□ 0.84
USB1Q9BQ65 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.31■□□□□ 0.84
USB1Q9BQ65 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.31■□□□□ 0.84
USB1Q9BQ65 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USB1Q9BQ65 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USB1Q9BQ65 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USB1Q9BQ65 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.31■□□□□ 0.84
USB1Q9BQ65 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
USB1Q9BQ65 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USB1Q9BQ65 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
USB1Q9BQ65 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.3■□□□□ 0.84
USB1Q9BQ65 AL356740.2-201ENST00000601559 647 ntBASIC20.3■□□□□ 0.84
USB1Q9BQ65 MIR6089-201ENST00000616698 64 ntBASIC20.3■□□□□ 0.84
USB1Q9BQ65 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USB1Q9BQ65 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
USB1Q9BQ65 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USB1Q9BQ65 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.3■□□□□ 0.84
USB1Q9BQ65 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
USB1Q9BQ65 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.29■□□□□ 0.84
USB1Q9BQ65 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USB1Q9BQ65 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
USB1Q9BQ65 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.29■□□□□ 0.84
USB1Q9BQ65 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.29■□□□□ 0.84
USB1Q9BQ65 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USB1Q9BQ65 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USB1Q9BQ65 AC008406.3-201ENST00000620001 1374 ntBASIC20.29■□□□□ 0.84
USB1Q9BQ65 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USB1Q9BQ65 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.29■□□□□ 0.84
USB1Q9BQ65 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.28■□□□□ 0.84
USB1Q9BQ65 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USB1Q9BQ65 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
USB1Q9BQ65 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.27■□□□□ 0.84
USB1Q9BQ65 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
USB1Q9BQ65 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USB1Q9BQ65 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.27■□□□□ 0.84
USB1Q9BQ65 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.27■□□□□ 0.84
USB1Q9BQ65 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.27■□□□□ 0.84
USB1Q9BQ65 SNX5-217ENST00000606557 1087 ntBASIC20.27■□□□□ 0.84
USB1Q9BQ65 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USB1Q9BQ65 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
USB1Q9BQ65 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.26■□□□□ 0.83
USB1Q9BQ65 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USB1Q9BQ65 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
USB1Q9BQ65 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
USB1Q9BQ65 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USB1Q9BQ65 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USB1Q9BQ65 MIR3621-201ENST00000580529 85 ntBASIC20.26■□□□□ 0.83
USB1Q9BQ65 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.26■□□□□ 0.83
USB1Q9BQ65 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USB1Q9BQ65 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USB1Q9BQ65 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.26■□□□□ 0.83
USB1Q9BQ65 SLC6A10P-202ENST00000431994 2058 ntBASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms