Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VMP1Q96GC9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.83■■□□□ 1.09
VMP1Q96GC9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.83■■□□□ 1.09
VMP1Q96GC9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
VMP1Q96GC9 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
VMP1Q96GC9 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VMP1Q96GC9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VMP1Q96GC9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
VMP1Q96GC9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
VMP1Q96GC9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VMP1Q96GC9 Z92544.1-202ENST00000571933 1220 ntBASIC21.82■■□□□ 1.08
VMP1Q96GC9 MIR4281-201ENST00000580852 62 ntBASIC21.82■■□□□ 1.08
VMP1Q96GC9 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VMP1Q96GC9 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VMP1Q96GC9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
VMP1Q96GC9 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
VMP1Q96GC9 BX664725.1-201ENST00000438252 379 ntBASIC21.81■■□□□ 1.08
VMP1Q96GC9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.81■■□□□ 1.08
VMP1Q96GC9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
VMP1Q96GC9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VMP1Q96GC9 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VMP1Q96GC9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.81■■□□□ 1.08
VMP1Q96GC9 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.81■■□□□ 1.08
VMP1Q96GC9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VMP1Q96GC9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.8■■□□□ 1.08
VMP1Q96GC9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VMP1Q96GC9 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
VMP1Q96GC9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VMP1Q96GC9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.8■■□□□ 1.08
VMP1Q96GC9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VMP1Q96GC9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.8■■□□□ 1.08
VMP1Q96GC9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
VMP1Q96GC9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VMP1Q96GC9 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
VMP1Q96GC9 AC090877.2-201ENST00000558441 1738 ntBASIC21.8■■□□□ 1.08
VMP1Q96GC9 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VMP1Q96GC9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VMP1Q96GC9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
VMP1Q96GC9 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VMP1Q96GC9 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VMP1Q96GC9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VMP1Q96GC9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VMP1Q96GC9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
VMP1Q96GC9 AC022211.4-201ENST00000625094 2161 ntBASIC21.79■■□□□ 1.08
VMP1Q96GC9 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VMP1Q96GC9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.79■■□□□ 1.08
VMP1Q96GC9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VMP1Q96GC9 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VMP1Q96GC9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VMP1Q96GC9 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.78■■□□□ 1.08
VMP1Q96GC9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.78■■□□□ 1.08
VMP1Q96GC9 AC137630.3-201ENST00000607245 391 ntBASIC21.78■■□□□ 1.08
VMP1Q96GC9 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VMP1Q96GC9 SLC6A10P-202ENST00000431994 2058 ntBASIC21.78■■□□□ 1.08
VMP1Q96GC9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VMP1Q96GC9 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
VMP1Q96GC9 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
VMP1Q96GC9 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VMP1Q96GC9 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
VMP1Q96GC9 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
VMP1Q96GC9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VMP1Q96GC9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VMP1Q96GC9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.77■■□□□ 1.08
VMP1Q96GC9 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
VMP1Q96GC9 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VMP1Q96GC9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
VMP1Q96GC9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VMP1Q96GC9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
VMP1Q96GC9 AC239859.2-201ENST00000444165 318 ntBASIC21.76■■□□□ 1.07
VMP1Q96GC9 KRT125P-201ENST00000546827 989 ntBASIC21.76■■□□□ 1.07
VMP1Q96GC9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.76■■□□□ 1.07
VMP1Q96GC9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VMP1Q96GC9 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.76■■□□□ 1.07
VMP1Q96GC9 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VMP1Q96GC9 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VMP1Q96GC9 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VMP1Q96GC9 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VMP1Q96GC9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VMP1Q96GC9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VMP1Q96GC9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VMP1Q96GC9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.75■■□□□ 1.07
VMP1Q96GC9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
VMP1Q96GC9 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VMP1Q96GC9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
VMP1Q96GC9 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.75■■□□□ 1.07
VMP1Q96GC9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VMP1Q96GC9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.75■■□□□ 1.07
VMP1Q96GC9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.75■■□□□ 1.07
VMP1Q96GC9 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VMP1Q96GC9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms