Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTX4Q96A99 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PTX4Q96A99 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTX4Q96A99 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
PTX4Q96A99 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTX4Q96A99 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
PTX4Q96A99 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTX4Q96A99 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
PTX4Q96A99 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PTX4Q96A99 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.63■□□□□ 0.73
PTX4Q96A99 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.63■□□□□ 0.73
PTX4Q96A99 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTX4Q96A99 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTX4Q96A99 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.62■□□□□ 0.73
PTX4Q96A99 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTX4Q96A99 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.62■□□□□ 0.73
PTX4Q96A99 AC026202.3-201ENST00000600805 1127 ntBASIC19.62■□□□□ 0.73
PTX4Q96A99 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTX4Q96A99 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTX4Q96A99 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTX4Q96A99 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTX4Q96A99 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTX4Q96A99 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTX4Q96A99 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
PTX4Q96A99 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.61■□□□□ 0.73
PTX4Q96A99 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.61■□□□□ 0.73
PTX4Q96A99 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTX4Q96A99 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTX4Q96A99 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTX4Q96A99 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PTX4Q96A99 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTX4Q96A99 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
PTX4Q96A99 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTX4Q96A99 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
PTX4Q96A99 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
PTX4Q96A99 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
PTX4Q96A99 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTX4Q96A99 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTX4Q96A99 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.59■□□□□ 0.73
PTX4Q96A99 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.59■□□□□ 0.73
PTX4Q96A99 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTX4Q96A99 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTX4Q96A99 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTX4Q96A99 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTX4Q96A99 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.58■□□□□ 0.73
PTX4Q96A99 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.58■□□□□ 0.73
PTX4Q96A99 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTX4Q96A99 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.58■□□□□ 0.73
PTX4Q96A99 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.58■□□□□ 0.72
PTX4Q96A99 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.58■□□□□ 0.72
PTX4Q96A99 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PTX4Q96A99 AC090877.2-201ENST00000558441 1738 ntBASIC19.58■□□□□ 0.72
PTX4Q96A99 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
PTX4Q96A99 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTX4Q96A99 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTX4Q96A99 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTX4Q96A99 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTX4Q96A99 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTX4Q96A99 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
PTX4Q96A99 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PTX4Q96A99 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTX4Q96A99 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTX4Q96A99 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTX4Q96A99 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.57■□□□□ 0.72
PTX4Q96A99 AC022413.1-201ENST00000624602 984 ntBASIC19.57■□□□□ 0.72
PTX4Q96A99 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
PTX4Q96A99 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.57■□□□□ 0.72
PTX4Q96A99 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTX4Q96A99 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.57■□□□□ 0.72
PTX4Q96A99 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.56■□□□□ 0.72
PTX4Q96A99 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTX4Q96A99 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTX4Q96A99 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
PTX4Q96A99 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTX4Q96A99 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.56■□□□□ 0.72
PTX4Q96A99 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.56■□□□□ 0.72
PTX4Q96A99 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
PTX4Q96A99 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTX4Q96A99 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTX4Q96A99 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTX4Q96A99 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTX4Q96A99 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.55■□□□□ 0.72
PTX4Q96A99 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTX4Q96A99 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
PTX4Q96A99 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTX4Q96A99 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
PTX4Q96A99 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTX4Q96A99 AC127496.7-201ENST00000625110 1798 ntBASIC19.55■□□□□ 0.72
PTX4Q96A99 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
PTX4Q96A99 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms