Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC44.39■■■■■ 4.7
SHROOM4Q9ULL8 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC44.39■■■■■ 4.7
SHROOM4Q9ULL8 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC44.39■■■■■ 4.7
SHROOM4Q9ULL8 RARRES2P11-201ENST00000635158 484 ntBASIC44.39■■■■■ 4.7
SHROOM4Q9ULL8 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC44.39■■■■■ 4.7
SHROOM4Q9ULL8 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC44.38■■■■■ 4.7
SHROOM4Q9ULL8 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC44.38■■■■■ 4.7
SHROOM4Q9ULL8 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC44.38■■■■■ 4.69
SHROOM4Q9ULL8 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC44.37■■■■■ 4.69
SHROOM4Q9ULL8 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 AC097639.1-201ENST00000565519 1891 ntBASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC44.36■■■■■ 4.69
SHROOM4Q9ULL8 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC44.34■■■■■ 4.69
SHROOM4Q9ULL8 AC092803.2-201ENST00000564287 1899 ntBASIC44.34■■■■■ 4.69
SHROOM4Q9ULL8 GATM-206ENST00000558336 1522 ntTSL 2 BASIC44.34■■■■■ 4.69
SHROOM4Q9ULL8 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC44.34■■■■■ 4.69
SHROOM4Q9ULL8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC44.33■■■■■ 4.69
SHROOM4Q9ULL8 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC44.33■■■■■ 4.69
SHROOM4Q9ULL8 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC44.33■■■■■ 4.69
SHROOM4Q9ULL8 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC44.31■■■■■ 4.68
SHROOM4Q9ULL8 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC44.31■■■■■ 4.68
SHROOM4Q9ULL8 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC44.31■■■■■ 4.68
SHROOM4Q9ULL8 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC44.31■■■■■ 4.68
SHROOM4Q9ULL8 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC44.31■■■■■ 4.68
SHROOM4Q9ULL8 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC44.31■■■■■ 4.68
SHROOM4Q9ULL8 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC44.3■■■■■ 4.68
SHROOM4Q9ULL8 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC44.3■■■■■ 4.68
SHROOM4Q9ULL8 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC44.3■■■■■ 4.68
SHROOM4Q9ULL8 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC44.3■■■■■ 4.68
SHROOM4Q9ULL8 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC44.3■■■■■ 4.68
SHROOM4Q9ULL8 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC44.29■■■■■ 4.68
SHROOM4Q9ULL8 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC44.29■■■■■ 4.68
SHROOM4Q9ULL8 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC44.29■■■■■ 4.68
SHROOM4Q9ULL8 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC44.28■■■■■ 4.68
SHROOM4Q9ULL8 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC44.28■■■■■ 4.68
SHROOM4Q9ULL8 DUX4L19-201ENST00000557448 1267 ntBASIC44.28■■■■■ 4.68
SHROOM4Q9ULL8 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC44.27■■■■■ 4.68
SHROOM4Q9ULL8 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC44.26■■■■■ 4.68
SHROOM4Q9ULL8 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC44.26■■■■■ 4.68
SHROOM4Q9ULL8 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC44.26■■■■■ 4.68
SHROOM4Q9ULL8 AC027682.1-201ENST00000562846 899 ntBASIC44.26■■■■■ 4.68
SHROOM4Q9ULL8 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC44.25■■■■■ 4.67
SHROOM4Q9ULL8 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC44.25■■■■■ 4.67
SHROOM4Q9ULL8 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC44.25■■■■■ 4.67
SHROOM4Q9ULL8 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC44.25■■■■■ 4.67
SHROOM4Q9ULL8 RASA4CP-201ENST00000424092 1398 ntBASIC44.25■■■■■ 4.67
SHROOM4Q9ULL8 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC44.25■■■■■ 4.67
SHROOM4Q9ULL8 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC44.24■■■■■ 4.67
SHROOM4Q9ULL8 CA15P2-201ENST00000611168 834 ntBASIC44.23■■■■■ 4.67
SHROOM4Q9ULL8 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC44.23■■■■■ 4.67
SHROOM4Q9ULL8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC44.22■■■■■ 4.67
SHROOM4Q9ULL8 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC44.22■■■■■ 4.67
SHROOM4Q9ULL8 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC44.22■■■■■ 4.67
SHROOM4Q9ULL8 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC44.22■■■■■ 4.67
SHROOM4Q9ULL8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC44.21■■■■■ 4.67
SHROOM4Q9ULL8 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC44.21■■■■■ 4.67
SHROOM4Q9ULL8 AC090877.2-201ENST00000558441 1738 ntBASIC44.21■■■■■ 4.67
SHROOM4Q9ULL8 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC44.2■■■■■ 4.67
SHROOM4Q9ULL8 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC44.19■■■■■ 4.67
SHROOM4Q9ULL8 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC44.19■■■■■ 4.66
SHROOM4Q9ULL8 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC44.18■■■■■ 4.66
SHROOM4Q9ULL8 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC44.18■■■■■ 4.66
SHROOM4Q9ULL8 STOX2-205ENST00000513034 807 ntTSL 3 BASIC44.18■■■■■ 4.66
SHROOM4Q9ULL8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC44.17■■■■■ 4.66
SHROOM4Q9ULL8 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC44.17■■■■■ 4.66
SHROOM4Q9ULL8 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC44.16■■■■■ 4.66
SHROOM4Q9ULL8 MIR4767-201ENST00000582827 78 ntBASIC44.16■■■■■ 4.66
SHROOM4Q9ULL8 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC44.16■■■■■ 4.66
SHROOM4Q9ULL8 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC44.16■■■■■ 4.66
SHROOM4Q9ULL8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC44.16■■■■■ 4.66
SHROOM4Q9ULL8 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC44.15■■■■■ 4.66
SHROOM4Q9ULL8 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC44.15■■■■■ 4.66
SHROOM4Q9ULL8 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC44.15■■■■■ 4.66
SHROOM4Q9ULL8 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC44.15■■■■■ 4.66
SHROOM4Q9ULL8 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC44.14■■■■■ 4.66
SHROOM4Q9ULL8 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC44.14■■■■■ 4.66
SHROOM4Q9ULL8 PTMA-205ENST00000410064 814 ntTSL 2 BASIC44.13■■■■■ 4.65
SHROOM4Q9ULL8 AC004448.1-201ENST00000458332 883 ntBASIC44.13■■■■■ 4.65
SHROOM4Q9ULL8 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC44.12■■■■■ 4.65
SHROOM4Q9ULL8 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC44.12■■■■■ 4.65
SHROOM4Q9ULL8 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC44.11■■■■■ 4.65
SHROOM4Q9ULL8 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC44.1■■■■■ 4.65
SHROOM4Q9ULL8 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC44.1■■■■■ 4.65
SHROOM4Q9ULL8 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC44.1■■■■■ 4.65
SHROOM4Q9ULL8 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC44.09■■■■■ 4.65
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms