Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DDX28Q9NUL7 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
DDX28Q9NUL7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.89■□□□□ 0.94
DDX28Q9NUL7 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
DDX28Q9NUL7 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
DDX28Q9NUL7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DDX28Q9NUL7 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.89■□□□□ 0.93
DDX28Q9NUL7 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.89■□□□□ 0.93
DDX28Q9NUL7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.89■□□□□ 0.93
DDX28Q9NUL7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
DDX28Q9NUL7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
DDX28Q9NUL7 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX28Q9NUL7 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
DDX28Q9NUL7 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.88■□□□□ 0.93
DDX28Q9NUL7 ABHD17AP5-201ENST00000580133 923 ntBASIC20.88■□□□□ 0.93
DDX28Q9NUL7 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX28Q9NUL7 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX28Q9NUL7 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX28Q9NUL7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
DDX28Q9NUL7 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX28Q9NUL7 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
DDX28Q9NUL7 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.87■□□□□ 0.93
DDX28Q9NUL7 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX28Q9NUL7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
DDX28Q9NUL7 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX28Q9NUL7 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 AL024507.2-201ENST00000606070 2574 ntBASIC20.86■□□□□ 0.93
DDX28Q9NUL7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.86■□□□□ 0.93
DDX28Q9NUL7 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
DDX28Q9NUL7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX28Q9NUL7 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX28Q9NUL7 RAP2CP1-202ENST00000605179 643 ntBASIC20.85■□□□□ 0.93
DDX28Q9NUL7 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DDX28Q9NUL7 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX28Q9NUL7 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX28Q9NUL7 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
DDX28Q9NUL7 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX28Q9NUL7 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX28Q9NUL7 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
DDX28Q9NUL7 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX28Q9NUL7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
DDX28Q9NUL7 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
DDX28Q9NUL7 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX28Q9NUL7 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
DDX28Q9NUL7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
DDX28Q9NUL7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 RNF126P1-201ENST00000567452 1320 ntBASIC20.82■□□□□ 0.92
DDX28Q9NUL7 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX28Q9NUL7 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
DDX28Q9NUL7 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
DDX28Q9NUL7 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.8■□□□□ 0.92
DDX28Q9NUL7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
DDX28Q9NUL7 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
DDX28Q9NUL7 AC026202.3-201ENST00000600805 1127 ntBASIC20.8■□□□□ 0.92
DDX28Q9NUL7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
DDX28Q9NUL7 SLC6A10P-202ENST00000431994 2058 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms