Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 KRT125P-201ENST00000546827 989 ntBASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.66■■□□□ 1.22
PCDHB3Q9Y5E6 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHB3Q9Y5E6 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDHB3Q9Y5E6 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDHB3Q9Y5E6 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PCDHB3Q9Y5E6 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PCDHB3Q9Y5E6 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.64■■□□□ 1.21
PCDHB3Q9Y5E6 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PCDHB3Q9Y5E6 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHB3Q9Y5E6 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 BX664725.1-201ENST00000438252 379 ntBASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.62■■□□□ 1.21
PCDHB3Q9Y5E6 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
PCDHB3Q9Y5E6 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.61■■□□□ 1.21
PCDHB3Q9Y5E6 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
PCDHB3Q9Y5E6 AP003733.4-201ENST00000623785 1697 ntBASIC22.61■■□□□ 1.21
PCDHB3Q9Y5E6 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.61■■□□□ 1.21
PCDHB3Q9Y5E6 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PCDHB3Q9Y5E6 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHB3Q9Y5E6 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDHB3Q9Y5E6 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.59■■□□□ 1.21
PCDHB3Q9Y5E6 LINC01124-201ENST00000409786 2117 ntBASIC22.58■■□□□ 1.21
PCDHB3Q9Y5E6 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
PCDHB3Q9Y5E6 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
PCDHB3Q9Y5E6 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PCDHB3Q9Y5E6 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.58■■□□□ 1.21
PCDHB3Q9Y5E6 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.58■■□□□ 1.21
PCDHB3Q9Y5E6 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.58■■□□□ 1.21
PCDHB3Q9Y5E6 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
PCDHB3Q9Y5E6 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PCDHB3Q9Y5E6 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.58■■□□□ 1.2
PCDHB3Q9Y5E6 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.58■■□□□ 1.2
PCDHB3Q9Y5E6 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHB3Q9Y5E6 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 AC008406.3-201ENST00000620001 1374 ntBASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 AC120024.1-201ENST00000562672 995 ntBASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.56■■□□□ 1.2
PCDHB3Q9Y5E6 MIR4787-201ENST00000607364 84 ntBASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms