Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
HDDC3Q8N4P3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 AC133561.4-201ENST00000566112 224 ntBASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 SNX5-217ENST00000606557 1087 ntBASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 AC091060.1-201ENST00000623524 1766 ntBASIC23.4■■□□□ 1.34
HDDC3Q8N4P3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
HDDC3Q8N4P3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
HDDC3Q8N4P3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
HDDC3Q8N4P3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
HDDC3Q8N4P3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
HDDC3Q8N4P3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
HDDC3Q8N4P3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.39■■□□□ 1.33
HDDC3Q8N4P3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
HDDC3Q8N4P3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
HDDC3Q8N4P3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HDDC3Q8N4P3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HDDC3Q8N4P3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HDDC3Q8N4P3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.38■■□□□ 1.33
HDDC3Q8N4P3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.38■■□□□ 1.33
HDDC3Q8N4P3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HDDC3Q8N4P3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.38■■□□□ 1.33
HDDC3Q8N4P3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
HDDC3Q8N4P3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.37■■□□□ 1.33
HDDC3Q8N4P3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
HDDC3Q8N4P3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HDDC3Q8N4P3 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HDDC3Q8N4P3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.37■■□□□ 1.33
HDDC3Q8N4P3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
HDDC3Q8N4P3 MIR4466-201ENST00000606121 54 ntBASIC23.36■■□□□ 1.33
HDDC3Q8N4P3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HDDC3Q8N4P3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HDDC3Q8N4P3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 SLC6A10P-202ENST00000431994 2058 ntBASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 AC145676.1-201ENST00000514988 2004 ntBASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HDDC3Q8N4P3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 MIR6722-201ENST00000617286 78 ntBASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
HDDC3Q8N4P3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HDDC3Q8N4P3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
HDDC3Q8N4P3 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HDDC3Q8N4P3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.33■■□□□ 1.33
HDDC3Q8N4P3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.33■■□□□ 1.33
HDDC3Q8N4P3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
HDDC3Q8N4P3 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
HDDC3Q8N4P3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HDDC3Q8N4P3 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
HDDC3Q8N4P3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HDDC3Q8N4P3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
HDDC3Q8N4P3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.32■■□□□ 1.32
HDDC3Q8N4P3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HDDC3Q8N4P3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.32■■□□□ 1.32
HDDC3Q8N4P3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HDDC3Q8N4P3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.31■■□□□ 1.32
HDDC3Q8N4P3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
HDDC3Q8N4P3 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HDDC3Q8N4P3 AC092666.2-201ENST00000613287 246 ntBASIC23.31■■□□□ 1.32
HDDC3Q8N4P3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HDDC3Q8N4P3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.31■■□□□ 1.32
HDDC3Q8N4P3 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
HDDC3Q8N4P3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
HDDC3Q8N4P3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
HDDC3Q8N4P3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.3■■□□□ 1.32
HDDC3Q8N4P3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.3■■□□□ 1.32
HDDC3Q8N4P3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.29■■□□□ 1.32
HDDC3Q8N4P3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.29■■□□□ 1.32
HDDC3Q8N4P3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HDDC3Q8N4P3 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HDDC3Q8N4P3 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.28■■□□□ 1.32
HDDC3Q8N4P3 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HDDC3Q8N4P3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HDDC3Q8N4P3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.28■■□□□ 1.32
HDDC3Q8N4P3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.28■■□□□ 1.32
HDDC3Q8N4P3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
HDDC3Q8N4P3 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HDDC3Q8N4P3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms