Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
TTC3P53804 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TTC3P53804 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC25.26■■□□□ 1.63
TTC3P53804 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TTC3P53804 PBX2P1-201ENST00000493219 1291 ntBASIC25.26■■□□□ 1.63
TTC3P53804 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC25.26■■□□□ 1.63
TTC3P53804 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC25.26■■□□□ 1.63
TTC3P53804 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC25.26■■□□□ 1.63
TTC3P53804 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TTC3P53804 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.26■■□□□ 1.63
TTC3P53804 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
TTC3P53804 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
TTC3P53804 AC026271.2-201ENST00000428091 497 ntBASIC25.25■■□□□ 1.63
TTC3P53804 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.25■■□□□ 1.63
TTC3P53804 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
TTC3P53804 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.25■■□□□ 1.63
TTC3P53804 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.25■■□□□ 1.63
TTC3P53804 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
TTC3P53804 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
TTC3P53804 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
TTC3P53804 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
TTC3P53804 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
TTC3P53804 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.24■■□□□ 1.63
TTC3P53804 GUK1-205ENST00000366722 850 ntTSL 3 BASIC25.24■■□□□ 1.63
TTC3P53804 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.24■■□□□ 1.63
TTC3P53804 UNC93B3-201ENST00000308076 687 ntBASIC25.24■■□□□ 1.63
TTC3P53804 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
TTC3P53804 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
TTC3P53804 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
TTC3P53804 AC142381.2-201ENST00000566120 298 ntBASIC25.24■■□□□ 1.63
TTC3P53804 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
TTC3P53804 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC25.23■■□□□ 1.63
TTC3P53804 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
TTC3P53804 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TTC3P53804 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.22■■□□□ 1.63
TTC3P53804 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
TTC3P53804 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TTC3P53804 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TTC3P53804 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TTC3P53804 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TTC3P53804 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TTC3P53804 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
TTC3P53804 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
TTC3P53804 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.21■■□□□ 1.63
TTC3P53804 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
TTC3P53804 AC024257.2-201ENST00000549699 147 ntBASIC25.21■■□□□ 1.63
TTC3P53804 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.21■■□□□ 1.63
TTC3P53804 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.21■■□□□ 1.63
TTC3P53804 AC135279.3-201ENST00000610945 1311 ntBASIC25.21■■□□□ 1.63
TTC3P53804 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
TTC3P53804 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.2■■□□□ 1.63
TTC3P53804 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
TTC3P53804 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
TTC3P53804 AC004448.1-201ENST00000458332 883 ntBASIC25.19■■□□□ 1.62
TTC3P53804 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
TTC3P53804 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
TTC3P53804 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
TTC3P53804 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
TTC3P53804 EDA-201ENST00000338901 1233 ntBASIC25.19■■□□□ 1.62
TTC3P53804 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.18■■□□□ 1.62
TTC3P53804 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.18■■□□□ 1.62
TTC3P53804 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.18■■□□□ 1.62
TTC3P53804 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
TTC3P53804 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC25.18■■□□□ 1.62
TTC3P53804 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
TTC3P53804 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.18■■□□□ 1.62
TTC3P53804 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.17■■□□□ 1.62
TTC3P53804 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.17■■□□□ 1.62
TTC3P53804 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
TTC3P53804 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
TTC3P53804 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.17■■□□□ 1.62
TTC3P53804 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
TTC3P53804 AL136162.1-201ENST00000607711 1078 ntBASIC25.16■■□□□ 1.62
TTC3P53804 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TTC3P53804 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
TTC3P53804 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
TTC3P53804 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.15■■□□□ 1.62
TTC3P53804 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.15■■□□□ 1.62
TTC3P53804 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC25.15■■□□□ 1.62
TTC3P53804 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
TTC3P53804 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.15■■□□□ 1.62
TTC3P53804 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
TTC3P53804 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.15■■□□□ 1.62
TTC3P53804 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
TTC3P53804 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TTC3P53804 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
TTC3P53804 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TTC3P53804 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TTC3P53804 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.15■■□□□ 1.62
TTC3P53804 LGR4-203ENST00000480977 492 ntTSL 2 BASIC25.15■■□□□ 1.62
TTC3P53804 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
TTC3P53804 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC25.15■■□□□ 1.62
TTC3P53804 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.15■■□□□ 1.62
TTC3P53804 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
TTC3P53804 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
TTC3P53804 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
TTC3P53804 AC005703.6-201ENST00000623265 1329 ntBASIC25.14■■□□□ 1.62
TTC3P53804 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
TTC3P53804 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.14■■□□□ 1.62
TTC3P53804 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms