Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB3O15347 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB3O15347 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB3O15347 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC18.64■□□□□ 0.58
HMGB3O15347 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB3O15347 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB3O15347 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
HMGB3O15347 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB3O15347 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB3O15347 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HMGB3O15347 C9orf163-202ENST00000624034 2573 ntBASIC18.64■□□□□ 0.57
HMGB3O15347 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB3O15347 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HMGB3O15347 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB3O15347 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
HMGB3O15347 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB3O15347 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HMGB3O15347 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGB3O15347 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGB3O15347 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB3O15347 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB3O15347 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGB3O15347 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB3O15347 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HMGB3O15347 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGB3O15347 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB3O15347 DUSP8P5-201ENST00000422884 1815 ntBASIC18.63■□□□□ 0.57
HMGB3O15347 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB3O15347 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB3O15347 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB3O15347 SLC6A10P-202ENST00000431994 2058 ntBASIC18.62■□□□□ 0.57
HMGB3O15347 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HMGB3O15347 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
HMGB3O15347 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB3O15347 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HMGB3O15347 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB3O15347 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HMGB3O15347 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB3O15347 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB3O15347 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HMGB3O15347 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB3O15347 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB3O15347 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB3O15347 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB3O15347 HCG11-201ENST00000411553 5696 ntBASIC18.6■□□□□ 0.57
HMGB3O15347 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB3O15347 CLDN5-201ENST00000403084 2357 ntBASIC18.6■□□□□ 0.57
HMGB3O15347 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB3O15347 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HMGB3O15347 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB3O15347 RPS2-210ENST00000530225 765 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB3O15347 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB3O15347 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB3O15347 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB3O15347 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB3O15347 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB3O15347 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGB3O15347 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB3O15347 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HMGB3O15347 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HMGB3O15347 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB3O15347 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB3O15347 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB3O15347 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB3O15347 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB3O15347 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB3O15347 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB3O15347 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB3O15347 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB3O15347 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB3O15347 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB3O15347 ABCB10P4-201ENST00000566803 2184 ntBASIC18.56■□□□□ 0.56
HMGB3O15347 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGB3O15347 AC004812.2-201ENST00000611079 2094 ntBASIC18.56■□□□□ 0.56
HMGB3O15347 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB3O15347 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB3O15347 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
HMGB3O15347 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HMGB3O15347 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB3O15347 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGB3O15347 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB3O15347 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB3O15347 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms