Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC22.36■■□□□ 1.17
LSM1O15116 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC22.36■■□□□ 1.17
LSM1O15116 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LSM1O15116 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
LSM1O15116 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.36■■□□□ 1.17
LSM1O15116 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LSM1O15116 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.36■■□□□ 1.17
LSM1O15116 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
LSM1O15116 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.36■■□□□ 1.17
LSM1O15116 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
LSM1O15116 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
LSM1O15116 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
LSM1O15116 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
LSM1O15116 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
LSM1O15116 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LSM1O15116 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
LSM1O15116 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
LSM1O15116 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.34■■□□□ 1.17
LSM1O15116 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LSM1O15116 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.34■■□□□ 1.17
LSM1O15116 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LSM1O15116 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LSM1O15116 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
LSM1O15116 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.34■■□□□ 1.17
LSM1O15116 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
LSM1O15116 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LSM1O15116 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
LSM1O15116 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LSM1O15116 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
LSM1O15116 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.33■■□□□ 1.17
LSM1O15116 RPS2P7-201ENST00000447334 885 ntBASIC22.33■■□□□ 1.17
LSM1O15116 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
LSM1O15116 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
LSM1O15116 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
LSM1O15116 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LSM1O15116 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
LSM1O15116 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LSM1O15116 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LSM1O15116 SPCS2P3-201ENST00000500401 656 ntBASIC22.32■■□□□ 1.16
LSM1O15116 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LSM1O15116 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LSM1O15116 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.31■■□□□ 1.16
LSM1O15116 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 AL592293.1-201ENST00000502889 1188 ntBASIC22.31■■□□□ 1.16
LSM1O15116 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
LSM1O15116 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LSM1O15116 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
LSM1O15116 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LSM1O15116 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
LSM1O15116 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LSM1O15116 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LSM1O15116 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LSM1O15116 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.29■■□□□ 1.16
LSM1O15116 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LSM1O15116 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.29■■□□□ 1.16
LSM1O15116 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.29■■□□□ 1.16
LSM1O15116 AC018755.3-202ENST00000596210 929 ntBASIC22.29■■□□□ 1.16
LSM1O15116 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.29■■□□□ 1.16
LSM1O15116 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LSM1O15116 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LSM1O15116 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.28■■□□□ 1.16
LSM1O15116 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.28■■□□□ 1.16
LSM1O15116 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.28■■□□□ 1.16
LSM1O15116 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
LSM1O15116 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LSM1O15116 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
LSM1O15116 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.28■■□□□ 1.16
LSM1O15116 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
LSM1O15116 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.28■■□□□ 1.16
LSM1O15116 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.27■■□□□ 1.16
LSM1O15116 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
LSM1O15116 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.27■■□□□ 1.16
LSM1O15116 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LSM1O15116 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
LSM1O15116 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.27■■□□□ 1.16
LSM1O15116 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.27■■□□□ 1.16
LSM1O15116 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LSM1O15116 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LSM1O15116 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LSM1O15116 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.26■■□□□ 1.15
LSM1O15116 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.26■■□□□ 1.15
LSM1O15116 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LSM1O15116 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LSM1O15116 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LSM1O15116 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
LSM1O15116 AC133561.1-201ENST00000568600 2415 ntBASIC22.26■■□□□ 1.15
LSM1O15116 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LSM1O15116 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
LSM1O15116 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
LSM1O15116 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.26■■□□□ 1.15
LSM1O15116 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LSM1O15116 DUSP8P5-201ENST00000422884 1815 ntBASIC22.26■■□□□ 1.15
LSM1O15116 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms