Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
MBD3L4A6NDZ8 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD3L4A6NDZ8 AC004448.1-201ENST00000458332 883 ntBASIC20.62■□□□□ 0.89
MBD3L4A6NDZ8 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.62■□□□□ 0.89
MBD3L4A6NDZ8 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.62■□□□□ 0.89
MBD3L4A6NDZ8 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.62■□□□□ 0.89
MBD3L4A6NDZ8 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD3L4A6NDZ8 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MBD3L4A6NDZ8 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 AL512631.2-201ENST00000604634 923 ntBASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.61■□□□□ 0.89
MBD3L4A6NDZ8 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
MBD3L4A6NDZ8 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.6■□□□□ 0.89
MBD3L4A6NDZ8 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MBD3L4A6NDZ8 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MBD3L4A6NDZ8 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.58■□□□□ 0.89
MBD3L4A6NDZ8 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MBD3L4A6NDZ8 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MBD3L4A6NDZ8 MIR4466-201ENST00000606121 54 ntBASIC20.58■□□□□ 0.89
MBD3L4A6NDZ8 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.57■□□□□ 0.88
MBD3L4A6NDZ8 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.56■□□□□ 0.88
MBD3L4A6NDZ8 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MBD3L4A6NDZ8 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MBD3L4A6NDZ8 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 AL139246.5-201ENST00000606645 996 ntBASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.55■□□□□ 0.88
MBD3L4A6NDZ8 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MBD3L4A6NDZ8 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
MBD3L4A6NDZ8 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.54■□□□□ 0.88
MBD3L4A6NDZ8 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.54■□□□□ 0.88
MBD3L4A6NDZ8 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
MBD3L4A6NDZ8 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
MBD3L4A6NDZ8 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MBD3L4A6NDZ8 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.53■□□□□ 0.88
MBD3L4A6NDZ8 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MBD3L4A6NDZ8 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MBD3L4A6NDZ8 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
MBD3L4A6NDZ8 AC131274.2-201ENST00000580697 1507 ntBASIC20.53■□□□□ 0.88
MBD3L4A6NDZ8 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MBD3L4A6NDZ8 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MBD3L4A6NDZ8 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MBD3L4A6NDZ8 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.52■□□□□ 0.88
MBD3L4A6NDZ8 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MBD3L4A6NDZ8 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
MBD3L4A6NDZ8 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.52■□□□□ 0.88
MBD3L4A6NDZ8 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.52■□□□□ 0.88
MBD3L4A6NDZ8 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
MBD3L4A6NDZ8 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.52■□□□□ 0.87
MBD3L4A6NDZ8 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
MBD3L4A6NDZ8 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3L4A6NDZ8 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3L4A6NDZ8 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
MBD3L4A6NDZ8 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3L4A6NDZ8 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
MBD3L4A6NDZ8 MIR638-201ENST00000385237 100 ntBASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms