Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.43□□□□□ -0.16e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-203ENST00000442060 2686 ntTSL 514.29□□□□□ -0.126e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-221ENST00000556571 568 ntTSL 413.86□□□□□ -0.196e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.6□□□□□ -0.236e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.276e-6■□□□□ 8.2
LIN28BQ6ZN17 SLC39A14-207ENST00000518348 1086 ntTSL 213.13□□□□□ -0.316e-9■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC12.75□□□□□ -0.376e-6■□□□□ 8.2
LIN28BQ6ZN17 CPVL-208ENST00000449801 528 ntTSL 412.44□□□□□ -0.426e-6■□□□□ 8.2
LIN28BQ6ZN17 SPTAN1-231ENST00000636337 100 ntTSL 511.78□□□□□ -0.526e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-208ENST00000553370 605 ntTSL 311.4□□□□□ -0.586e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-210ENST00000553779 530 ntTSL 411.4□□□□□ -0.586e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-215ENST00000555616 919 ntTSL 310.82□□□□□ -0.686e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-213ENST00000554508 585 ntTSL 49.87□□□□□ -0.836e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-212ENST00000554158 571 ntTSL 49.46□□□□□ -0.96e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-221ENST00000515235 5540 ntTSL 28.73□□□□□ -1.016e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-220ENST00000513628 2225 ntTSL 2 BASIC8.09□□□□□ -1.116e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-227ENST00000522415 900 ntTSL 58.02□□□□□ -1.136e-6■□□□□ 8.2
LIN28BQ6ZN17 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC7.46□□□□□ -1.226e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC7.08□□□□□ -1.286e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC6.92□□□□□ -1.36e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-213ENST00000509606 844 ntTSL 26.6□□□□□ -1.356e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-214ENST00000509951 736 ntTSL 53.98□□□□□ -1.776e-6■□□□□ 8.2
LIN28BQ6ZN17 SPTAN1-232ENST00000636483 100 ntTSL 52.11□□□□□ -2.076e-6■□□□□ 8.2
LIN28BQ6ZN17 GNAS-232ENST00000476196 1839 ntTSL 211.49□□□□□ -0.573e-6■□□□□ 8.2
LIN28BQ6ZN17 GNAS-246ENST00000487981 581 ntTSL 511.36□□□□□ -0.593e-6■□□□□ 8.2
LIN28BQ6ZN17 GNAS-254ENST00000494081 557 ntTSL 58.73□□□□□ -1.013e-6■□□□□ 8.2
LIN28BQ6ZN17 GNAS-255ENST00000496934 2837 ntTSL 27.29□□□□□ -1.243e-6■□□□□ 8.2
LIN28BQ6ZN17 KDM3A-210ENST00000470160 2955 ntTSL 27.25□□□□□ -1.253e-10■□□□□ 8.2
LIN28BQ6ZN17 KDM3A-214ENST00000491383 4485 ntTSL 1 (best)4.74□□□□□ -1.653e-10■□□□□ 8.2
LIN28BQ6ZN17 MYL12A-210ENST00000583449 334 ntTSL 212.08□□□□□ -0.482e-14■□□□□ 8.2
LIN28BQ6ZN17 MYL12A-211ENST00000585090 614 ntTSL 311.91□□□□□ -0.52e-14■□□□□ 8.2
LIN28BQ6ZN17 SLC5A6-217ENST00000488743 3174 ntTSL 210.98□□□□□ -0.652e-7■□□□□ 8.2
LIN28BQ6ZN17 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.72e-7■□□□□ 8.2
LIN28BQ6ZN17 CAT-202ENST00000525707 562 ntTSL 29.33□□□□□ -0.923e-6■□□□□ 8.2
LIN28BQ6ZN17 MYL6B-203ENST00000548571 223 ntTSL 49.95□□□□□ -0.824e-14■□□□□ 8.2
LIN28BQ6ZN17 HSP90B1-202ENST00000540297 590 ntTSL 322.25■■□□□ 1.151e-20■□□□□ 8.2
LIN28BQ6ZN17 HSP90B1-205ENST00000549334 581 ntTSL 419.7■□□□□ 0.741e-20■□□□□ 8.2
LIN28BQ6ZN17 SORT1-208ENST00000495777 391 ntTSL 210.2□□□□□ -0.781e-6■□□□□ 8.2
LIN28BQ6ZN17 SORT1-205ENST00000483508 759 ntTSL 38.6□□□□□ -1.031e-6■□□□□ 8.2
LIN28BQ6ZN17 TMEM50B-207ENST00000470682 364 ntTSL 53.61□□□□□ -1.832e-10■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-207ENST00000558007 469 ntTSL 219.05■□□□□ 0.642e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-211ENST00000558748 657 ntTSL 318.64■□□□□ 0.572e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.84■□□□□ 0.452e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-209ENST00000558483 857 ntTSL 317.31■□□□□ 0.362e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.2■□□□□ 0.182e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.56■□□□□ 0.082e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.082e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-229ENST00000561038 2160 ntTSL 1 (best)15.17■□□□□ 0.022e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.37□□□□□ -0.112e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC14.3□□□□□ -0.122e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-224ENST00000559910 1562 ntTSL 5 BASIC14.21□□□□□ -0.142e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-201ENST00000348719 1684 ntTSL 5 BASIC14.2□□□□□ -0.142e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-218ENST00000559287 1748 ntTSL 1 (best)13.23□□□□□ -0.292e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-214ENST00000558865 735 ntTSL 512.71□□□□□ -0.372e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-202ENST00000355299 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.432e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-225ENST00000559943 360 ntTSL 310.22□□□□□ -0.772e-7■□□□□ 8.2
LIN28BQ6ZN17 HSD17B11-205ENST00000508413 563 ntTSL 59.1□□□□□ -0.952e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-220ENST00000559479 573 ntTSL 38.79□□□□□ -12e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-203ENST00000399440 1652 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.032e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-215ENST00000558932 231 ntTSL 36.38□□□□□ -1.392e-7■□□□□ 8.2
LIN28BQ6ZN17 LMNB1-204ENST00000463908 557 ntTSL 420.97■□□□□ 0.956e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.61■□□□□ 0.896e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-211ENST00000470199 551 ntTSL 419.93■□□□□ 0.786e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-219ENST00000502751 570 ntTSL 418.74■□□□□ 0.596e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.39■□□□□ 0.536e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-223ENST00000515459 757 ntTSL 518.35■□□□□ 0.536e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.2■□□□□ 0.56e-6■□□□□ 8.1
LIN28BQ6ZN17 NET1-203ENST00000449083 637 ntTSL 517.73■□□□□ 0.436e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.69■□□□□ 0.426e-6■□□□□ 8.1
LIN28BQ6ZN17 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.326e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17■□□□□ 0.316e-6■□□□□ 8.1
LIN28BQ6ZN17 GTF2A2-201ENST00000267869 518 ntTSL 316.36■□□□□ 0.216e-6■□□□□ 8.1
LIN28BQ6ZN17 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.3■□□□□ 0.26e-6■□□□□ 8.1
LIN28BQ6ZN17 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.186e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.6■□□□□ 0.096e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-203ENST00000460265 3475 ntTSL 1 (best)15.29■□□□□ 0.046e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-210ENST00000469565 591 ntTSL 414.95□□□□□ -0.026e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.026e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-218ENST00000502357 537 ntTSL 414.89□□□□□ -0.036e-6■□□□□ 8.1
LIN28BQ6ZN17 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.096e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-220ENST00000504687 546 ntTSL 413.83□□□□□ -0.26e-6■□□□□ 8.1
LIN28BQ6ZN17 BCOR-208ENST00000413905 1945 ntTSL 513.56□□□□□ -0.246e-6■□□□□ 8.1
LIN28BQ6ZN17 MLF2-207ENST00000540710 458 ntTSL 313.41□□□□□ -0.266e-6■□□□□ 8.1
LIN28BQ6ZN17 GTF2A2-202ENST00000396060 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.426e-6■□□□□ 8.1
LIN28BQ6ZN17 NET1-201ENST00000355029 3402 ntTSL 1 (best) BASIC11.36□□□□□ -0.596e-6■□□□□ 8.1
LIN28BQ6ZN17 BCOR-204ENST00000378463 2230 ntTSL 5 BASIC11.36□□□□□ -0.596e-6■□□□□ 8.1
LIN28BQ6ZN17 NET1-202ENST00000380359 3253 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.756e-6■□□□□ 8.1
LIN28BQ6ZN17 BCOR-210ENST00000442018 2189 ntTSL 29.86□□□□□ -0.836e-6■□□□□ 8.1
LIN28BQ6ZN17 MORF4L1-222ENST00000560710 908 ntTSL 29.44□□□□□ -0.96e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-203ENST00000536711 578 ntTSL 49.11□□□□□ -0.956e-6■□□□□ 8.1
LIN28BQ6ZN17 HBS1L-214ENST00000529641 881 ntTSL 58.81□□□□□ -16e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.086e-6■□□□□ 8.1
LIN28BQ6ZN17 BCOR-209ENST00000427012 1969 ntTSL 58.1□□□□□ -1.116e-6■□□□□ 8.1
LIN28BQ6ZN17 HBS1L-213ENST00000529169 633 ntTSL 37.6□□□□□ -1.196e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-206ENST00000546323 575 ntTSL 3 BASIC7.12□□□□□ -1.276e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-204ENST00000538186 552 ntTSL 36.85□□□□□ -1.316e-6■□□□□ 8.1
LIN28BQ6ZN17 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.45□□□□□ -1.386e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-208ENST00000504788 1801 ntTSL 25.43□□□□□ -1.546e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-205ENST00000472034 730 ntTSL 35.27□□□□□ -1.576e-6■□□□□ 8.1
LIN28BQ6ZN17 SLC35F5-206ENST00000459683 744 ntTSL 25.24□□□□□ -1.576e-6■□□□□ 8.1
Retrieved 100 of 21,972 protein–RNA pairs in 557.9 ms