RNA–Protein interactions for RNA: ENST00000502357.5

LMNA-218, Transcript of lamin A/C, humanhuman

TSL 4

Gene LMNA, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-218ENST00000502357 NISCHQ9Y2I1 1504 aa32.62■■■□□ 2.81
LMNA-218ENST00000502357 ABCC9O60706 1549 aa29.66■■■□□ 2.34
LMNA-218ENST00000502357 CCDC180Q9P1Z9 1646 aa29.38■■■□□ 2.29
LMNA-218ENST00000502357 DNAJC5BQ9UF47 199 aa28.29■■■□□ 2.12
LMNA-218ENST00000502357 RB1CC1Q8TDY2 1594 aa28.07■■■□□ 2.08
LMNA-218ENST00000502357 NACADO15069 1562 aa27.85■■■□□ 2.05
LMNA-218ENST00000502357 PABPN1Q86U42 306 aaKnown RBP eCLIP27.58■■■□□ 2.01
LMNA-218ENST00000502357 UNC13AQ9UPW8 1703 aa27.55■■■□□ 2
LMNA-218ENST00000502357 DCAF8L2P0C7V8 631 aa27.46■■□□□ 1.99
LMNA-218ENST00000502357 MYO15BQ96JP2 1530 aa27.43■■□□□ 1.98
LMNA-218ENST00000502357 BICRAQ9NZM4 1560 aa27.43■■□□□ 1.98
LMNA-218ENST00000502357 ZCCHC6Q5VYS8 1495 aaKnown RBP26.98■■□□□ 1.91
LMNA-218ENST00000502357 DCAF1Q9Y4B6 1507 aa26.95■■□□□ 1.91
LMNA-218ENST00000502357 SHROOM4Q9ULL8 1493 aa26.92■■□□□ 1.9
LMNA-218ENST00000502357 CC2D2AQ9P2K1 1620 aa26.82■■□□□ 1.88
LMNA-218ENST00000502357 CECR2Q9BXF3 1484 aa26.76■■□□□ 1.87
LMNA-218ENST00000502357 SCRIBQ14160 1630 aa26.71■■□□□ 1.87
LMNA-218ENST00000502357 EIF4G1Q04637 1599 aaKnown RBP26.69■■□□□ 1.86
LMNA-218ENST00000502357 DNAJC5Q9H3Z4 198 aa26.12■■□□□ 1.77
LMNA-218ENST00000502357 NCAPD3P42695 1498 aa25.77■■□□□ 1.72
LMNA-218ENST00000502357 CUX2O14529 1486 aa25.71■■□□□ 1.71
LMNA-218ENST00000502357 ATAD2BQ9ULI0 1458 aa25.63■■□□□ 1.69
LMNA-218ENST00000502357 ERCC6Q03468 1493 aa25.53■■□□□ 1.68
LMNA-218ENST00000502357 HMGXB3Q12766 1538 aa25.51■■□□□ 1.67
LMNA-218ENST00000502357 SMARCA4P51532 1647 aa25.5■■□□□ 1.67
LMNA-218ENST00000502357 NESP48681 1621 aa25.46■■□□□ 1.67
LMNA-218ENST00000502357 SMARCA2P51531 1590 aa25.46■■□□□ 1.67
LMNA-218ENST00000502357 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
LMNA-218ENST00000502357 BAZ1AQ9NRL2 1556 aaPredicted RBP25.29■■□□□ 1.64
LMNA-218ENST00000502357 BAZ1BQ9UIG0 1483 aaKnown RBP25.27■■□□□ 1.64
LMNA-218ENST00000502357 THOC2Q8NI27 1593 aaKnown RBP25.27■■□□□ 1.64
LMNA-218ENST00000502357 LAMC3Q9Y6N6 1575 aa25.17■■□□□ 1.62
LMNA-218ENST00000502357 MROH2BQ7Z745 1585 aa25.16■■□□□ 1.62
LMNA-218ENST00000502357 KIF21AQ7Z4S6 1674 aa25.08■■□□□ 1.61
LMNA-218ENST00000502357 PDS5BQ9NTI5 1447 aa24.99■■□□□ 1.59
LMNA-218ENST00000502357 CADPSQ9ULU8 1353 aa24.93■■□□□ 1.58
LMNA-218ENST00000502357 MRC2Q9UBG0 1479 aa24.83■■□□□ 1.57
LMNA-218ENST00000502357 WDR62O43379 1518 aa24.83■■□□□ 1.57
LMNA-218ENST00000502357 WIZO95785 1651 aa24.81■■□□□ 1.56
LMNA-218ENST00000502357 TRIM41Q8WV44 630 aa24.67■■□□□ 1.54
LMNA-218ENST00000502357 CEP164Q9UPV0 1460 aa24.63■■□□□ 1.53
LMNA-218ENST00000502357 FANCD2Q9BXW9 1451 aa24.62■■□□□ 1.53
LMNA-218ENST00000502357 CFTRP13569 1480 aa24.61■■□□□ 1.53
LMNA-218ENST00000502357 RSF1Q96T23 1441 aaPredicted RBP24.52■■□□□ 1.52
LMNA-218ENST00000502357 URB2Q14146 1524 aaKnown RBP24.51■■□□□ 1.51
LMNA-218ENST00000502357 TOP2AP11388 1531 aaKnown RBP24.45■■□□□ 1.5
LMNA-218ENST00000502357 OSCARQ8IYS5 282 aa24.44■■□□□ 1.5
LMNA-218ENST00000502357 PRDM2Q13029 1718 aa24.27■■□□□ 1.48
LMNA-218ENST00000502357 ZNF608Q9ULD9 1512 aaPredicted RBP24.25■■□□□ 1.47
LMNA-218ENST00000502357 RIMBP3CA6NJZ7 1639 aa24.22■■□□□ 1.47
LMNA-218ENST00000502357 RIMBP3BA6NNM3 1639 aa24.22■■□□□ 1.47
LMNA-218ENST00000502357 RIMBP3Q9UFD9 1639 aa24.22■■□□□ 1.47
LMNA-218ENST00000502357 CCDC88BA6NC98 1476 aa24.21■■□□□ 1.47
LMNA-218ENST00000502357 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
LMNA-218ENST00000502357 TOPBP1Q92547 1522 aa24.15■■□□□ 1.46
LMNA-218ENST00000502357 ARHGEF11O15085 1522 aa24.1■■□□□ 1.45
LMNA-218ENST00000502357 EIF4G3O43432 1585 aaKnown RBP24.04■■□□□ 1.44
LMNA-218ENST00000502357 ABCC8Q09428 1581 aa24■■□□□ 1.43
LMNA-218ENST00000502357 DNMBPQ6XZF7 1577 aa24■■□□□ 1.43
LMNA-218ENST00000502357 TARBP1Q13395 1621 aaKnown RBP24■■□□□ 1.43
LMNA-218ENST00000502357 AQRO60306 1485 aaKnown RBP eCLIP23.95■■□□□ 1.421e-17■■■■■ 40.9
LMNA-218ENST00000502357 CHD1O14646 1710 aa23.93■■□□□ 1.42
LMNA-218ENST00000502357 POLA1P09884 1462 aaPredicted RBP23.88■■□□□ 1.41
LMNA-218ENST00000502357 ARAP1Q96P48 1450 aa23.87■■□□□ 1.41
LMNA-218ENST00000502357 CYB5RLQ6IPT4 315 aa23.87■■□□□ 1.41
LMNA-218ENST00000502357 RAD54L2Q9Y4B4 1467 aa23.81■■□□□ 1.4
LMNA-218ENST00000502357 TDRD9Q8NDG6 1382 aaKnown RBP23.74■■□□□ 1.39
LMNA-218ENST00000502357 SOGA1O94964 1423 aa23.72■■□□□ 1.39
LMNA-218ENST00000502357 CLASP1Q7Z460 1538 aa23.71■■□□□ 1.39
LMNA-218ENST00000502357 FBLN2P98095 1184 aa23.7■■□□□ 1.38
LMNA-218ENST00000502357 SNAPC4Q5SXM2 1469 aa23.67■■□□□ 1.38
LMNA-218ENST00000502357 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
LMNA-218ENST00000502357 FGD5Q6ZNL6 1462 aa23.66■■□□□ 1.38
LMNA-218ENST00000502357 CUX1P39880 1505 aa23.64■■□□□ 1.38
LMNA-218ENST00000502357 TRHP20396 242 aaPredicted RBP23.62■■□□□ 1.37
LMNA-218ENST00000502357 MAGI1Q96QZ7 1491 aaPredicted RBP23.59■■□□□ 1.37
LMNA-218ENST00000502357 GRIN2BQ13224 1484 aa23.55■■□□□ 1.36
LMNA-218ENST00000502357 SYNJ1O43426 1573 aa23.54■■□□□ 1.36
LMNA-218ENST00000502357 SYNJ2O15056 1496 aa23.52■■□□□ 1.36
LMNA-218ENST00000502357 CHMP7Q8WUX9 453 aaPredicted RBP23.52■■□□□ 1.36
LMNA-218ENST00000502357 PBRM1Q86U86 1689 aa23.44■■□□□ 1.34
LMNA-218ENST00000502357 GAPVD1Q14C86 1478 aa23.43■■□□□ 1.34
LMNA-218ENST00000502357 ABCA5Q8WWZ7 1642 aa23.41■■□□□ 1.34
LMNA-218ENST00000502357 ABCA10Q8WWZ4 1543 aa23.4■■□□□ 1.34
LMNA-218ENST00000502357 ERCC6L2Q5T890 1561 aa23.34■■□□□ 1.33
LMNA-218ENST00000502357 GRIN2AQ12879 1464 aa23.26■■□□□ 1.31
LMNA-218ENST00000502357 NUP160Q12769 1436 aa23.25■■□□□ 1.31
LMNA-218ENST00000502357 CEP170Q5SW79 1584 aa23.24■■□□□ 1.31
LMNA-218ENST00000502357 ADAMTS12P58397 1594 aa23.23■■□□□ 1.31
LMNA-218ENST00000502357 SHROOM2Q13796 1616 aa23.2■■□□□ 1.3
LMNA-218ENST00000502357 WRNQ14191 1432 aaPredicted RBP eCLIP23.17■■□□□ 1.35e-6■■■■■ 29.2
LMNA-218ENST00000502357 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
LMNA-218ENST00000502357 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
LMNA-218ENST00000502357 FHAD1B1AJZ9 1412 aa23.12■■□□□ 1.29
LMNA-218ENST00000502357 AEBP2Q6ZN18 517 aaPredicted RBP23.1■■□□□ 1.29
LMNA-218ENST00000502357 ERICH3Q5RHP9 1530 aa23.08■■□□□ 1.28
LMNA-218ENST00000502357 KIF13AQ9H1H9 1805 aa23.05■■□□□ 1.28
LMNA-218ENST00000502357 SUPT5HO00267 1087 aaKnown RBP23.01■■□□□ 1.27
LMNA-218ENST00000502357 PRG4Q92954 1404 aaPredicted RBP22.99■■□□□ 1.27
LMNA-218ENST00000502357 JPH4Q96JJ6 628 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms