RNA–Protein interactions for RNA: ENST00000470160.1

KDM3A-210, Transcript of lysine demethylase 3A, humanhuman

TSL 2

Gene KDM3A, Length 2,955 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-210ENST00000470160 NISCHQ9Y2I1 1504 aa16.11■□□□□ 0.17
KDM3A-210ENST00000470160 CCDC180Q9P1Z9 1646 aa14.16□□□□□ -0.14
KDM3A-210ENST00000470160 ZCCHC6Q5VYS8 1495 aaKnown RBP13.57□□□□□ -0.24
KDM3A-210ENST00000470160 DCAF1Q9Y4B6 1507 aa13.49□□□□□ -0.25
KDM3A-210ENST00000470160 MYO15BQ96JP2 1530 aa13.34□□□□□ -0.27
KDM3A-210ENST00000470160 NACADO15069 1562 aa13.1□□□□□ -0.31
KDM3A-210ENST00000470160 ABCC9O60706 1549 aa12.97□□□□□ -0.33
KDM3A-210ENST00000470160 RB1CC1Q8TDY2 1594 aa12.92□□□□□ -0.34
KDM3A-210ENST00000470160 DCAF8L2P0C7V8 631 aa12.81□□□□□ -0.36
KDM3A-210ENST00000470160 SHROOM4Q9ULL8 1493 aa12.8□□□□□ -0.36
KDM3A-210ENST00000470160 SCRIBQ14160 1630 aa12.76□□□□□ -0.37
KDM3A-210ENST00000470160 UNC13AQ9UPW8 1703 aa12.71□□□□□ -0.38
KDM3A-210ENST00000470160 BICRAQ9NZM4 1560 aa12.55□□□□□ -0.4
KDM3A-210ENST00000470160 RSF1Q96T23 1441 aaPredicted RBP12.46□□□□□ -0.42
KDM3A-210ENST00000470160 BAZ1AQ9NRL2 1556 aaPredicted RBP12.44□□□□□ -0.42
KDM3A-210ENST00000470160 CECR2Q9BXF3 1484 aa12.39□□□□□ -0.43
KDM3A-210ENST00000470160 MROH2BQ7Z745 1585 aa12.38□□□□□ -0.43
KDM3A-210ENST00000470160 SMARCA4P51532 1647 aa12.37□□□□□ -0.43
KDM3A-210ENST00000470160 PEG3Q9GZU2 1588 aa12.35□□□□□ -0.43
KDM3A-210ENST00000470160 SUPT5HO00267 1087 aaKnown RBP12.34□□□□□ -0.43
KDM3A-210ENST00000470160 WIZO95785 1651 aa12.28□□□□□ -0.44
KDM3A-210ENST00000470160 TOP2AP11388 1531 aaKnown RBP12.23□□□□□ -0.45
KDM3A-210ENST00000470160 SMARCA2P51531 1590 aa12.16□□□□□ -0.46
KDM3A-210ENST00000470160 PABPN1Q86U42 306 aaKnown RBP eCLIP12.15□□□□□ -0.47
KDM3A-210ENST00000470160 EIF4G1Q04637 1599 aaKnown RBP12.13□□□□□ -0.47
KDM3A-210ENST00000470160 ATAD2BQ9ULI0 1458 aa12.11□□□□□ -0.47
KDM3A-210ENST00000470160 HMGXB3Q12766 1538 aa12.09□□□□□ -0.47
KDM3A-210ENST00000470160 NCAPD3P42695 1498 aa12.06□□□□□ -0.48
KDM3A-210ENST00000470160 CHIC1Q5VXU3 224 aa12.04□□□□□ -0.48
KDM3A-210ENST00000470160 CCDC88BA6NC98 1476 aa12.03□□□□□ -0.48
KDM3A-210ENST00000470160 BAZ1BQ9UIG0 1483 aaKnown RBP12□□□□□ -0.49
KDM3A-210ENST00000470160 CC2D2AQ9P2K1 1620 aa11.89□□□□□ -0.51
KDM3A-210ENST00000470160 PRDM2Q13029 1718 aa11.87□□□□□ -0.51
KDM3A-210ENST00000470160 CFTRP13569 1480 aa11.78□□□□□ -0.52
KDM3A-210ENST00000470160 BIVM-ERCC5R4GMW8 1640 aa11.74□□□□□ -0.53
KDM3A-210ENST00000470160 ABCC8Q09428 1581 aa11.72□□□□□ -0.53
KDM3A-210ENST00000470160 TRIM41Q8WV44 630 aa11.71□□□□□ -0.54
KDM3A-210ENST00000470160 TOP2BQ02880 1626 aa11.7□□□□□ -0.54
KDM3A-210ENST00000470160 WRNQ14191 1432 aaPredicted RBP eCLIP11.69□□□□□ -0.54
KDM3A-210ENST00000470160 EEA1Q15075 1411 aa11.68□□□□□ -0.54
KDM3A-210ENST00000470160 SYNJ1O43426 1573 aa11.67□□□□□ -0.54
KDM3A-210ENST00000470160 CADPSQ9ULU8 1353 aa11.67□□□□□ -0.54
KDM3A-210ENST00000470160 LAMC3Q9Y6N6 1575 aa11.65□□□□□ -0.54
KDM3A-210ENST00000470160 CUX1P39880 1505 aa11.58□□□□□ -0.55
KDM3A-210ENST00000470160 KIF21BO75037 1637 aa11.53□□□□□ -0.56
KDM3A-210ENST00000470160 DNMBPQ6XZF7 1577 aa11.51□□□□□ -0.57
KDM3A-210ENST00000470160 FANCD2Q9BXW9 1451 aa11.51□□□□□ -0.57
KDM3A-210ENST00000470160 SOGA1O94964 1423 aa11.5□□□□□ -0.57
KDM3A-210ENST00000470160 PDS5BQ9NTI5 1447 aa11.46□□□□□ -0.58
KDM3A-210ENST00000470160 RUSC2Q8N2Y8 1516 aa11.46□□□□□ -0.58
KDM3A-210ENST00000470160 ERICH3Q5RHP9 1530 aa11.45□□□□□ -0.58
KDM3A-210ENST00000470160 NESP48681 1621 aa11.45□□□□□ -0.58
KDM3A-210ENST00000470160 CEP164Q9UPV0 1460 aa11.44□□□□□ -0.58
KDM3A-210ENST00000470160 WDR97A6NE52 1622 aa11.44□□□□□ -0.58
KDM3A-210ENST00000470160 CSRNP3Q8WYN3 585 aa11.43□□□□□ -0.58
KDM3A-210ENST00000470160 TOPBP1Q92547 1522 aa11.43□□□□□ -0.58
KDM3A-210ENST00000470160 KIF21AQ7Z4S6 1674 aa11.43□□□□□ -0.58
KDM3A-210ENST00000470160 LOC105371045A0A1W2PR82 267 aa11.43□□□□□ -0.58
KDM3A-210ENST00000470160 GOLGA3Q08378 1498 aa11.43□□□□□ -0.58
KDM3A-210ENST00000470160 TNIKQ9UKE5 1360 aa11.42□□□□□ -0.58
KDM3A-210ENST00000470160 PRXQ9BXM0 1461 aa11.41□□□□□ -0.58
KDM3A-210ENST00000470160 FGD5Q6ZNL6 1462 aa11.41□□□□□ -0.58
KDM3A-210ENST00000470160 ABCA10Q8WWZ4 1543 aa11.4□□□□□ -0.58
KDM3A-210ENST00000470160 KIF27Q86VH2 1401 aa11.4□□□□□ -0.59
KDM3A-210ENST00000470160 URB2Q14146 1524 aaKnown RBP11.39□□□□□ -0.59
KDM3A-210ENST00000470160 POLA1P09884 1462 aaPredicted RBP11.37□□□□□ -0.59
KDM3A-210ENST00000470160 DNAJC5BQ9UF47 199 aa11.35□□□□□ -0.59
KDM3A-210ENST00000470160 WDR62O43379 1518 aa11.34□□□□□ -0.59
KDM3A-210ENST00000470160 ABCA5Q8WWZ7 1642 aa11.34□□□□□ -0.59
KDM3A-210ENST00000470160 TARBP1Q13395 1621 aaKnown RBP11.33□□□□□ -0.6
KDM3A-210ENST00000470160 MRC2Q9UBG0 1479 aa11.33□□□□□ -0.6
KDM3A-210ENST00000470160 FAM9AQ8IZU1 332 aaPredicted RBP11.32□□□□□ -0.6
KDM3A-210ENST00000470160 CUL7Q14999 1698 aa11.32□□□□□ -0.6
KDM3A-210ENST00000470160 CUX2O14529 1486 aa11.3□□□□□ -0.6
KDM3A-210ENST00000470160 RAPGEF2Q9Y4G8 1499 aa11.3□□□□□ -0.6
KDM3A-210ENST00000470160 IGF1RP08069 1367 aa11.29□□□□□ -0.6
KDM3A-210ENST00000470160 CEP162Q5TB80 1403 aa11.29□□□□□ -0.6
KDM3A-210ENST00000470160 THOC2Q8NI27 1593 aaKnown RBP11.28□□□□□ -0.6
KDM3A-210ENST00000470160 RAD54L2Q9Y4B4 1467 aa11.24□□□□□ -0.61
KDM3A-210ENST00000470160 IFT140Q96RY7 1462 aa11.22□□□□□ -0.61
KDM3A-210ENST00000470160 PBRM1Q86U86 1689 aa11.21□□□□□ -0.61
KDM3A-210ENST00000470160 CARMIL1Q5VZK9 1371 aa11.2□□□□□ -0.62
KDM3A-210ENST00000470160 CTTNBP2Q8WZ74 1663 aa11.19□□□□□ -0.62
KDM3A-210ENST00000470160 GAPVD1Q14C86 1478 aa11.19□□□□□ -0.62
KDM3A-210ENST00000470160 CLIP1P30622 1438 aa11.18□□□□□ -0.62
KDM3A-210ENST00000470160 VPS8Q8N3P4 1428 aa11.15□□□□□ -0.62
KDM3A-210ENST00000470160 ADAMTS12P58397 1594 aa11.15□□□□□ -0.62
KDM3A-210ENST00000470160 UBTFP17480 764 aaKnown RBP11.14□□□□□ -0.63
KDM3A-210ENST00000470160 EFCAB5A4FU69 1503 aa11.13□□□□□ -0.63
KDM3A-210ENST00000470160 ARAP1Q96P48 1450 aa11.13□□□□□ -0.63
KDM3A-210ENST00000470160 GRIN2BQ13224 1484 aa11.12□□□□□ -0.63
KDM3A-210ENST00000470160 ERCC6Q03468 1493 aa11.11□□□□□ -0.63
KDM3A-210ENST00000470160 ARHGAP35Q9NRY4 1499 aa11.11□□□□□ -0.63
KDM3A-210ENST00000470160 FHAD1B1AJZ9 1412 aa11.11□□□□□ -0.63
KDM3A-210ENST00000470160 MAP3K1Q13233 1512 aa11.1□□□□□ -0.63
KDM3A-210ENST00000470160 EIF4G3O43432 1585 aaKnown RBP11.1□□□□□ -0.63
KDM3A-210ENST00000470160 TRIM26Q12899 539 aaPredicted RBP11.1□□□□□ -0.63
KDM3A-210ENST00000470160 SAMD9Q5K651 1589 aa11.1□□□□□ -0.63
KDM3A-210ENST00000470160 TDRD9Q8NDG6 1382 aaKnown RBP11.08□□□□□ -0.64
KDM3A-210ENST00000470160 MAGI1Q96QZ7 1491 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms