RNA–Protein interactions for RNA: ENST00000463908.2

LMNB1-204, Transcript of lamin B1, humanhuman

TSL 4

Gene LMNB1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-204ENST00000463908 NISCHQ9Y2I1 1504 aa45.49■■■■■ 4.87
LMNB1-204ENST00000463908 CCDC180Q9P1Z9 1646 aa40.18■■■■■ 4.02
LMNB1-204ENST00000463908 ABCC9O60706 1549 aa39.18■■■■□ 3.86
LMNB1-204ENST00000463908 DCAF8L2P0C7V8 631 aa37.99■■■■□ 3.67
LMNB1-204ENST00000463908 ZCCHC6Q5VYS8 1495 aaKnown RBP37.93■■■■□ 3.66
LMNB1-204ENST00000463908 NACADO15069 1562 aa37.77■■■■□ 3.64
LMNB1-204ENST00000463908 RB1CC1Q8TDY2 1594 aa37.72■■■■□ 3.63
LMNB1-204ENST00000463908 MYO15BQ96JP2 1530 aa37.65■■■■□ 3.62
LMNB1-204ENST00000463908 DCAF1Q9Y4B6 1507 aa37.61■■■■□ 3.61
LMNB1-204ENST00000463908 DNAJC5BQ9UF47 199 aa36.93■■■■□ 3.5
LMNB1-204ENST00000463908 UNC13AQ9UPW8 1703 aa36.87■■■■□ 3.49
LMNB1-204ENST00000463908 PABPN1Q86U42 306 aaKnown RBP eCLIP36.76■■■■□ 3.48
LMNB1-204ENST00000463908 SCRIBQ14160 1630 aa36.76■■■■□ 3.48
LMNB1-204ENST00000463908 BICRAQ9NZM4 1560 aa36.66■■■■□ 3.46
LMNB1-204ENST00000463908 SHROOM4Q9ULL8 1493 aa36.18■■■■□ 3.38
LMNB1-204ENST00000463908 EIF4G1Q04637 1599 aaKnown RBP35.63■■■■□ 3.29
LMNB1-204ENST00000463908 CECR2Q9BXF3 1484 aa35.48■■■■□ 3.27
LMNB1-204ENST00000463908 CC2D2AQ9P2K1 1620 aa35.42■■■■□ 3.26
LMNB1-204ENST00000463908 SMARCA4P51532 1647 aa35.19■■■■□ 3.22
LMNB1-204ENST00000463908 BAZ1AQ9NRL2 1556 aaPredicted RBP35.18■■■■□ 3.22
LMNB1-204ENST00000463908 MROH2BQ7Z745 1585 aa35.1■■■■□ 3.21
LMNB1-204ENST00000463908 ATAD2BQ9ULI0 1458 aa34.99■■■■□ 3.19
LMNB1-204ENST00000463908 NCAPD3P42695 1498 aa34.93■■■■□ 3.18
LMNB1-204ENST00000463908 SMARCA2P51531 1590 aa34.87■■■■□ 3.17
LMNB1-204ENST00000463908 PEG3Q9GZU2 1588 aa34.84■■■■□ 3.17
LMNB1-204ENST00000463908 RSF1Q96T23 1441 aaPredicted RBP34.82■■■■□ 3.17
LMNB1-204ENST00000463908 WIZO95785 1651 aa34.7■■■■□ 3.14
LMNB1-204ENST00000463908 HMGXB3Q12766 1538 aa34.69■■■■□ 3.14
LMNB1-204ENST00000463908 BAZ1BQ9UIG0 1483 aaKnown RBP34.66■■■■□ 3.14
LMNB1-204ENST00000463908 TOP2AP11388 1531 aaKnown RBP34.3■■■■□ 3.08
LMNB1-204ENST00000463908 SUPT5HO00267 1087 aaKnown RBP34.2■■■■□ 3.07
LMNB1-204ENST00000463908 DNAJC5Q9H3Z4 198 aa34.15■■■■□ 3.06
LMNB1-204ENST00000463908 NESP48681 1621 aa34.02■■■■□ 3.04
LMNB1-204ENST00000463908 CCDC88BA6NC98 1476 aa34■■■■□ 3.03
LMNB1-204ENST00000463908 CADPSQ9ULU8 1353 aa33.94■■■■□ 3.02
LMNB1-204ENST00000463908 LAMC3Q9Y6N6 1575 aa33.86■■■■□ 3.01
LMNB1-204ENST00000463908 CUX2O14529 1486 aa33.85■■■■□ 3.01
LMNB1-204ENST00000463908 CFTRP13569 1480 aa33.78■■■■□ 3
LMNB1-204ENST00000463908 ERCC6Q03468 1493 aa33.76■■■□□ 2.99
LMNB1-204ENST00000463908 PDS5BQ9NTI5 1447 aa33.68■■■□□ 2.98
LMNB1-204ENST00000463908 KIF21AQ7Z4S6 1674 aa33.52■■■□□ 2.96
LMNB1-204ENST00000463908 FANCD2Q9BXW9 1451 aa33.5■■■□□ 2.95
LMNB1-204ENST00000463908 CEP164Q9UPV0 1460 aa33.39■■■□□ 2.94
LMNB1-204ENST00000463908 PRDM2Q13029 1718 aa33.36■■■□□ 2.93
LMNB1-204ENST00000463908 THOC2Q8NI27 1593 aaKnown RBP33.35■■■□□ 2.93
LMNB1-204ENST00000463908 MRC2Q9UBG0 1479 aa33.3■■■□□ 2.92
LMNB1-204ENST00000463908 WDR62O43379 1518 aa33.18■■■□□ 2.9
LMNB1-204ENST00000463908 URB2Q14146 1524 aaKnown RBP33.18■■■□□ 2.9
LMNB1-204ENST00000463908 TOPBP1Q92547 1522 aa33.01■■■□□ 2.87
LMNB1-204ENST00000463908 ABCC8Q09428 1581 aa32.97■■■□□ 2.87
LMNB1-204ENST00000463908 DNMBPQ6XZF7 1577 aa32.95■■■□□ 2.86
LMNB1-204ENST00000463908 CUX1P39880 1505 aa32.88■■■□□ 2.85
LMNB1-204ENST00000463908 WRNQ14191 1432 aaPredicted RBP eCLIP32.77■■■□□ 2.84
LMNB1-204ENST00000463908 POLA1P09884 1462 aaPredicted RBP32.75■■■□□ 2.83
LMNB1-204ENST00000463908 FGD5Q6ZNL6 1462 aa32.71■■■□□ 2.83
LMNB1-204ENST00000463908 IFT140Q96RY7 1462 aa32.7■■■□□ 2.83
LMNB1-204ENST00000463908 SYNJ1O43426 1573 aa32.67■■■□□ 2.82
LMNB1-204ENST00000463908 SOGA1O94964 1423 aa32.66■■■□□ 2.82
LMNB1-204ENST00000463908 RAD54L2Q9Y4B4 1467 aa32.66■■■□□ 2.82
LMNB1-204ENST00000463908 TOP2BQ02880 1626 aa32.63■■■□□ 2.81
LMNB1-204ENST00000463908 TARBP1Q13395 1621 aaKnown RBP32.62■■■□□ 2.81
LMNB1-204ENST00000463908 BIVM-ERCC5R4GMW8 1640 aa32.6■■■□□ 2.81
LMNB1-204ENST00000463908 ZNF608Q9ULD9 1512 aaPredicted RBP32.6■■■□□ 2.81
LMNB1-204ENST00000463908 TRIM41Q8WV44 630 aa32.51■■■□□ 2.79
LMNB1-204ENST00000463908 TDRD9Q8NDG6 1382 aaKnown RBP32.47■■■□□ 2.79
LMNB1-204ENST00000463908 AQRO60306 1485 aaKnown RBP eCLIP32.47■■■□□ 2.792e-7■■■■■ 34.6
LMNB1-204ENST00000463908 ABCA10Q8WWZ4 1543 aa32.4■■■□□ 2.78
LMNB1-204ENST00000463908 EIF4G3O43432 1585 aaKnown RBP32.37■■■□□ 2.77
LMNB1-204ENST00000463908 WDR97A6NE52 1622 aa32.35■■■□□ 2.77
LMNB1-204ENST00000463908 GAPVD1Q14C86 1478 aa32.25■■■□□ 2.75
LMNB1-204ENST00000463908 ABCA5Q8WWZ7 1642 aa32.21■■■□□ 2.75
LMNB1-204ENST00000463908 GRIN2BQ13224 1484 aa32.19■■■□□ 2.74
LMNB1-204ENST00000463908 CHIC1Q5VXU3 224 aa32.13■■■□□ 2.73
LMNB1-204ENST00000463908 SNAPC4Q5SXM2 1469 aa32.1■■■□□ 2.73
LMNB1-204ENST00000463908 OSCARQ8IYS5 282 aa32.08■■■□□ 2.73
LMNB1-204ENST00000463908 PBRM1Q86U86 1689 aa32.06■■■□□ 2.72
LMNB1-204ENST00000463908 KIF27Q86VH2 1401 aa32.05■■■□□ 2.72
LMNB1-204ENST00000463908 MAGI1Q96QZ7 1491 aaPredicted RBP32.03■■■□□ 2.72
LMNB1-204ENST00000463908 FBLN2P98095 1184 aa32.01■■■□□ 2.71
LMNB1-204ENST00000463908 IGF1RP08069 1367 aa31.99■■■□□ 2.71
LMNB1-204ENST00000463908 ERICH3Q5RHP9 1530 aa31.99■■■□□ 2.71
LMNB1-204ENST00000463908 RUSC2Q8N2Y8 1516 aa31.97■■■□□ 2.71
LMNB1-204ENST00000463908 RIMBP3CA6NJZ7 1639 aa31.97■■■□□ 2.71
LMNB1-204ENST00000463908 RIMBP3BA6NNM3 1639 aa31.97■■■□□ 2.71
LMNB1-204ENST00000463908 RIMBP3Q9UFD9 1639 aa31.97■■■□□ 2.71
LMNB1-204ENST00000463908 CHMP7Q8WUX9 453 aaPredicted RBP31.96■■■□□ 2.71
LMNB1-204ENST00000463908 SYNJ2O15056 1496 aa31.94■■■□□ 2.7
LMNB1-204ENST00000463908 CHD1O14646 1710 aa31.89■■■□□ 2.7
LMNB1-204ENST00000463908 FHAD1B1AJZ9 1412 aa31.88■■■□□ 2.69
LMNB1-204ENST00000463908 ADAMTS12P58397 1594 aa31.86■■■□□ 2.69
LMNB1-204ENST00000463908 GRIN2AQ12879 1464 aa31.78■■■□□ 2.68
LMNB1-204ENST00000463908 ARHGEF11O15085 1522 aa31.76■■■□□ 2.68
LMNB1-204ENST00000463908 CARMIL1Q5VZK9 1371 aa31.76■■■□□ 2.67
LMNB1-204ENST00000463908 CUL7Q14999 1698 aa31.7■■■□□ 2.66
LMNB1-204ENST00000463908 CSRNP3Q8WYN3 585 aa31.65■■■□□ 2.66
LMNB1-204ENST00000463908 NUP160Q12769 1436 aa31.65■■■□□ 2.66
LMNB1-204ENST00000463908 FAM9AQ8IZU1 332 aaPredicted RBP31.63■■■□□ 2.65
LMNB1-204ENST00000463908 CLASP1Q7Z460 1538 aa31.61■■■□□ 2.65
LMNB1-204ENST00000463908 CEP170Q5SW79 1584 aa31.6■■■□□ 2.65
LMNB1-204ENST00000463908 EEA1Q15075 1411 aa31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms