RNA–Protein interactions for RNA: ENST00000368301.6

LMNA-207, Transcript of lamin A/C, humanhuman

TSL 2 BASIC

Gene LMNA, Length 2,461 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-207ENST00000368301 NISCHQ9Y2I1 1504 aa39■■■■□ 3.83
LMNA-207ENST00000368301 CCDC180Q9P1Z9 1646 aa33.39■■■□□ 2.94
LMNA-207ENST00000368301 ZCCHC6Q5VYS8 1495 aaKnown RBP32.91■■■□□ 2.86
LMNA-207ENST00000368301 SHROOM4Q9ULL8 1493 aa32.85■■■□□ 2.85
LMNA-207ENST00000368301 DCAF8L2P0C7V8 631 aa32.35■■■□□ 2.77
LMNA-207ENST00000368301 DCAF1Q9Y4B6 1507 aa32.01■■■□□ 2.71
LMNA-207ENST00000368301 SUPT5HO00267 1087 aaKnown RBP31.95■■■□□ 2.71
LMNA-207ENST00000368301 ABCC9O60706 1549 aa31.29■■■□□ 2.6
LMNA-207ENST00000368301 MYO15BQ96JP2 1530 aa31.26■■■□□ 2.59
LMNA-207ENST00000368301 SCRIBQ14160 1630 aa31.2■■■□□ 2.59
LMNA-207ENST00000368301 NACADO15069 1562 aa30.96■■■□□ 2.55
LMNA-207ENST00000368301 CHIC1Q5VXU3 224 aa30.88■■■□□ 2.53
LMNA-207ENST00000368301 RSF1Q96T23 1441 aaPredicted RBP30.67■■■□□ 2.5
LMNA-207ENST00000368301 RB1CC1Q8TDY2 1594 aa30.55■■■□□ 2.48
LMNA-207ENST00000368301 CECR2Q9BXF3 1484 aa30.46■■■□□ 2.47
LMNA-207ENST00000368301 MROH2BQ7Z745 1585 aa30.31■■■□□ 2.44
LMNA-207ENST00000368301 UNC13AQ9UPW8 1703 aa30.15■■■□□ 2.42
LMNA-207ENST00000368301 WIZO95785 1651 aa30.12■■■□□ 2.41
LMNA-207ENST00000368301 BAZ1AQ9NRL2 1556 aaPredicted RBP29.97■■■□□ 2.39
LMNA-207ENST00000368301 LOC105371045A0A1W2PR82 267 aa29.94■■■□□ 2.38
LMNA-207ENST00000368301 PABPN1Q86U42 306 aaKnown RBP eCLIP29.82■■■□□ 2.36
LMNA-207ENST00000368301 SMARCA4P51532 1647 aa29.81■■■□□ 2.36
LMNA-207ENST00000368301 TRIM41Q8WV44 630 aa29.8■■■□□ 2.36
LMNA-207ENST00000368301 BICRAQ9NZM4 1560 aa29.79■■■□□ 2.36
LMNA-207ENST00000368301 TOP2AP11388 1531 aaKnown RBP29.64■■■□□ 2.33
LMNA-207ENST00000368301 FAM9AQ8IZU1 332 aaPredicted RBP29.55■■■□□ 2.32
LMNA-207ENST00000368301 EIF4G1Q04637 1599 aaKnown RBP29.55■■■□□ 2.32
LMNA-207ENST00000368301 CCDC88BA6NC98 1476 aa29.49■■■□□ 2.31
LMNA-207ENST00000368301 SMARCA2P51531 1590 aa29.47■■■□□ 2.31
LMNA-207ENST00000368301 PCGF6Q9BYE7 350 aa29.39■■■□□ 2.3
LMNA-207ENST00000368301 EHMT2Q96KQ7 1210 aa29.3■■■□□ 2.28
LMNA-207ENST00000368301 ABCC8Q09428 1581 aa29.27■■■□□ 2.28
LMNA-207ENST00000368301 PEG3Q9GZU2 1588 aa29.27■■■□□ 2.28
LMNA-207ENST00000368301 ATAD2BQ9ULI0 1458 aa29.14■■■□□ 2.26
LMNA-207ENST00000368301 HRCP23327 699 aa29.08■■■□□ 2.25
LMNA-207ENST00000368301 BAZ1BQ9UIG0 1483 aaKnown RBP29.02■■■□□ 2.24
LMNA-207ENST00000368301 TRIM26Q12899 539 aaPredicted RBP28.94■■■□□ 2.22
LMNA-207ENST00000368301 SOGA1O94964 1423 aa28.89■■■□□ 2.21
LMNA-207ENST00000368301 WRNQ14191 1432 aaPredicted RBP eCLIP28.8■■■□□ 2.25e-6■■■■□ 20.9
LMNA-207ENST00000368301 RUSC2Q8N2Y8 1516 aa28.79■■■□□ 2.2
LMNA-207ENST00000368301 SYNJ1O43426 1573 aa28.72■■■□□ 2.19
LMNA-207ENST00000368301 NCAPD3P42695 1498 aa28.66■■■□□ 2.18
LMNA-207ENST00000368301 CSRNP3Q8WYN3 585 aa28.63■■■□□ 2.17
LMNA-207ENST00000368301 HMGXB3Q12766 1538 aa28.62■■■□□ 2.17
LMNA-207ENST00000368301 EEA1Q15075 1411 aa28.61■■■□□ 2.17
LMNA-207ENST00000368301 PPARGC1BQ86YN6 1023 aaKnown RBP28.61■■■□□ 2.17
LMNA-207ENST00000368301 CEP162Q5TB80 1403 aa28.51■■■□□ 2.15
LMNA-207ENST00000368301 TNIKQ9UKE5 1360 aa28.49■■■□□ 2.15
LMNA-207ENST00000368301 UBTFP17480 764 aaKnown RBP28.45■■■□□ 2.14
LMNA-207ENST00000368301 GOLGA3Q08378 1498 aa28.42■■■□□ 2.14
LMNA-207ENST00000368301 TOP2BQ02880 1626 aa28.4■■■□□ 2.14
LMNA-207ENST00000368301 BIVM-ERCC5R4GMW8 1640 aa28.32■■■□□ 2.12
LMNA-207ENST00000368301 CEP164Q9UPV0 1460 aa28.31■■■□□ 2.12
LMNA-207ENST00000368301 CFTRP13569 1480 aa28.29■■■□□ 2.12
LMNA-207ENST00000368301 KIF21BO75037 1637 aa28.29■■■□□ 2.12
LMNA-207ENST00000368301 CUX1P39880 1505 aa28.25■■■□□ 2.11
LMNA-207ENST00000368301 TTBK1Q5TCY1 1321 aaPredicted RBP28.23■■■□□ 2.11
LMNA-207ENST00000368301 RAPGEF2Q9Y4G8 1499 aa28.21■■■□□ 2.11
LMNA-207ENST00000368301 CC2D2AQ9P2K1 1620 aa28.2■■■□□ 2.11
LMNA-207ENST00000368301 CLIP1P30622 1438 aa28.07■■■□□ 2.08
LMNA-207ENST00000368301 PRDM2Q13029 1718 aa28.07■■■□□ 2.08
LMNA-207ENST00000368301 CADPSQ9ULU8 1353 aa28.05■■■□□ 2.08
LMNA-207ENST00000368301 ZEB1P37275 1124 aaPredicted RBP28.04■■■□□ 2.08
LMNA-207ENST00000368301 RANGAP1P46060 587 aaPredicted RBP28.01■■■□□ 2.08
LMNA-207ENST00000368301 PRXQ9BXM0 1461 aa27.99■■■□□ 2.07
LMNA-207ENST00000368301 KIF27Q86VH2 1401 aa27.94■■■□□ 2.06
LMNA-207ENST00000368301 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.92■■■□□ 2.06
LMNA-207ENST00000368301 ERICH3Q5RHP9 1530 aa27.92■■■□□ 2.06
LMNA-207ENST00000368301 VPS8Q8N3P4 1428 aa27.9■■■□□ 2.06
LMNA-207ENST00000368301 CUX2O14529 1486 aa27.8■■■□□ 2.04
LMNA-207ENST00000368301 FGD5Q6ZNL6 1462 aa27.8■■■□□ 2.04
LMNA-207ENST00000368301 FANCD2Q9BXW9 1451 aa27.79■■■□□ 2.04
LMNA-207ENST00000368301 NESP48681 1621 aa27.77■■■□□ 2.04
LMNA-207ENST00000368301 CCER1Q8TC90 406 aaPredicted RBP27.77■■■□□ 2.04
LMNA-207ENST00000368301 ARAP1Q96P48 1450 aa27.72■■■□□ 2.03
LMNA-207ENST00000368301 IGF1RP08069 1367 aa27.71■■■□□ 2.03
LMNA-207ENST00000368301 APLP2Q06481 763 aa27.65■■■□□ 2.02
LMNA-207ENST00000368301 DNAJC5BQ9UF47 199 aa27.65■■■□□ 2.02
LMNA-207ENST00000368301 DNMBPQ6XZF7 1577 aa27.6■■■□□ 2.01
LMNA-207ENST00000368301 RAD54L2Q9Y4B4 1467 aa27.58■■■□□ 2.01
LMNA-207ENST00000368301 TOPBP1Q92547 1522 aa27.58■■■□□ 2.01
LMNA-207ENST00000368301 CARMIL1Q5VZK9 1371 aa27.56■■■□□ 2
LMNA-207ENST00000368301 ARHGAP35Q9NRY4 1499 aa27.56■■■□□ 2
LMNA-207ENST00000368301 HNRNPUL2Q1KMD3 747 aaKnown RBP27.55■■■□□ 2
LMNA-207ENST00000368301 POLA1P09884 1462 aaPredicted RBP27.54■■■□□ 2
LMNA-207ENST00000368301 LAMC3Q9Y6N6 1575 aa27.5■■□□□ 1.99
LMNA-207ENST00000368301 KANK4Q5T7N3 995 aaPredicted RBP27.48■■□□□ 1.99
LMNA-207ENST00000368301 ABCA10Q8WWZ4 1543 aa27.46■■□□□ 1.99
LMNA-207ENST00000368301 URB2Q14146 1524 aaKnown RBP27.45■■□□□ 1.98
LMNA-207ENST00000368301 PDS5BQ9NTI5 1447 aa27.31■■□□□ 1.96
LMNA-207ENST00000368301 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
LMNA-207ENST00000368301 WDR97A6NE52 1622 aa27.29■■□□□ 1.96
LMNA-207ENST00000368301 TDRD9Q8NDG6 1382 aaKnown RBP27.25■■□□□ 1.95
LMNA-207ENST00000368301 P3H3Q8IVL6 736 aa27.25■■□□□ 1.95
LMNA-207ENST00000368301 CUL7Q14999 1698 aa27.22■■□□□ 1.95
LMNA-207ENST00000368301 ABCA5Q8WWZ7 1642 aa27.18■■□□□ 1.94
LMNA-207ENST00000368301 RRBP1Q9P2E9 1410 aaKnown RBP27.18■■□□□ 1.94
LMNA-207ENST00000368301 TIAM1Q13009 1591 aa27.16■■□□□ 1.94
LMNA-207ENST00000368301 FHOD3Q2V2M9 1422 aa27.14■■□□□ 1.94
LMNA-207ENST00000368301 GAPVD1Q14C86 1478 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms