RNA–Protein interactions for RNA: ENST00000469565.6

LMNA-210, Transcript of lamin A/C, humanhuman

TSL 4

Gene LMNA, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-210ENST00000469565 NISCHQ9Y2I1 1504 aa32.26■■■□□ 2.76
LMNA-210ENST00000469565 ABCC9O60706 1549 aa28.87■■■□□ 2.21
LMNA-210ENST00000469565 CCDC180Q9P1Z9 1646 aa28.51■■■□□ 2.15
LMNA-210ENST00000469565 DNAJC5BQ9UF47 199 aa27.53■■■□□ 2
LMNA-210ENST00000469565 RB1CC1Q8TDY2 1594 aa27.26■■□□□ 1.96
LMNA-210ENST00000469565 DCAF8L2P0C7V8 631 aa27.05■■□□□ 1.92
LMNA-210ENST00000469565 NACADO15069 1562 aa26.95■■□□□ 1.9
LMNA-210ENST00000469565 ZCCHC6Q5VYS8 1495 aaKnown RBP26.92■■□□□ 1.9
LMNA-210ENST00000469565 PABPN1Q86U42 306 aaKnown RBP eCLIP26.81■■□□□ 1.88
LMNA-210ENST00000469565 DCAF1Q9Y4B6 1507 aa26.63■■□□□ 1.85
LMNA-210ENST00000469565 UNC13AQ9UPW8 1703 aa26.62■■□□□ 1.85
LMNA-210ENST00000469565 MYO15BQ96JP2 1530 aa26.6■■□□□ 1.85
LMNA-210ENST00000469565 BICRAQ9NZM4 1560 aa26.45■■□□□ 1.82
LMNA-210ENST00000469565 SCRIBQ14160 1630 aa26.14■■□□□ 1.77
LMNA-210ENST00000469565 CECR2Q9BXF3 1484 aa26.06■■□□□ 1.76
LMNA-210ENST00000469565 SHROOM4Q9ULL8 1493 aa26.06■■□□□ 1.76
LMNA-210ENST00000469565 CC2D2AQ9P2K1 1620 aa26.05■■□□□ 1.76
LMNA-210ENST00000469565 EIF4G1Q04637 1599 aaKnown RBP25.86■■□□□ 1.73
LMNA-210ENST00000469565 DNAJC5Q9H3Z4 198 aa25.69■■□□□ 1.7
LMNA-210ENST00000469565 CUX2O14529 1486 aa25.09■■□□□ 1.61
LMNA-210ENST00000469565 SMARCA4P51532 1647 aa24.98■■□□□ 1.59
LMNA-210ENST00000469565 BAZ1AQ9NRL2 1556 aaPredicted RBP24.98■■□□□ 1.59
LMNA-210ENST00000469565 ERCC6Q03468 1493 aa24.98■■□□□ 1.59
LMNA-210ENST00000469565 MROH2BQ7Z745 1585 aa24.9■■□□□ 1.58
LMNA-210ENST00000469565 NCAPD3P42695 1498 aa24.89■■□□□ 1.57
LMNA-210ENST00000469565 ATAD2BQ9ULI0 1458 aa24.74■■□□□ 1.55
LMNA-210ENST00000469565 SMARCA2P51531 1590 aa24.73■■□□□ 1.55
LMNA-210ENST00000469565 RSF1Q96T23 1441 aaPredicted RBP24.72■■□□□ 1.55
LMNA-210ENST00000469565 WIZO95785 1651 aa24.69■■□□□ 1.54
LMNA-210ENST00000469565 PEG3Q9GZU2 1588 aa24.65■■□□□ 1.54
LMNA-210ENST00000469565 HMGXB3Q12766 1538 aa24.64■■□□□ 1.53
LMNA-210ENST00000469565 NESP48681 1621 aa24.64■■□□□ 1.53
LMNA-210ENST00000469565 BAZ1BQ9UIG0 1483 aaKnown RBP24.59■■□□□ 1.53
LMNA-210ENST00000469565 SUPT5HO00267 1087 aaKnown RBP24.54■■□□□ 1.52
LMNA-210ENST00000469565 THOC2Q8NI27 1593 aaKnown RBP24.47■■□□□ 1.51
LMNA-210ENST00000469565 LAMC3Q9Y6N6 1575 aa24.41■■□□□ 1.5
LMNA-210ENST00000469565 TOP2AP11388 1531 aaKnown RBP24.39■■□□□ 1.49
LMNA-210ENST00000469565 TRIM41Q8WV44 630 aa24.37■■□□□ 1.49
LMNA-210ENST00000469565 PDS5BQ9NTI5 1447 aa24.31■■□□□ 1.48
LMNA-210ENST00000469565 KIF21AQ7Z4S6 1674 aa24.3■■□□□ 1.48
LMNA-210ENST00000469565 CCDC88BA6NC98 1476 aa24.13■■□□□ 1.45
LMNA-210ENST00000469565 CADPSQ9ULU8 1353 aa24.12■■□□□ 1.45
LMNA-210ENST00000469565 MRC2Q9UBG0 1479 aa24.1■■□□□ 1.45
LMNA-210ENST00000469565 WDR62O43379 1518 aa24.05■■□□□ 1.44
LMNA-210ENST00000469565 OSCARQ8IYS5 282 aa23.92■■□□□ 1.42
LMNA-210ENST00000469565 CEP164Q9UPV0 1460 aa23.91■■□□□ 1.42
LMNA-210ENST00000469565 CFTRP13569 1480 aa23.88■■□□□ 1.41
LMNA-210ENST00000469565 FANCD2Q9BXW9 1451 aa23.83■■□□□ 1.41
LMNA-210ENST00000469565 PRDM2Q13029 1718 aa23.81■■□□□ 1.4
LMNA-210ENST00000469565 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.38
LMNA-210ENST00000469565 RIMBP3CA6NJZ7 1639 aa23.6■■□□□ 1.37
LMNA-210ENST00000469565 RIMBP3BA6NNM3 1639 aa23.6■■□□□ 1.37
LMNA-210ENST00000469565 RIMBP3Q9UFD9 1639 aa23.6■■□□□ 1.37
LMNA-210ENST00000469565 ARHGEF11O15085 1522 aa23.47■■□□□ 1.35
LMNA-210ENST00000469565 IFT140Q96RY7 1462 aa23.45■■□□□ 1.34
LMNA-210ENST00000469565 ZNF608Q9ULD9 1512 aaPredicted RBP23.44■■□□□ 1.34
LMNA-210ENST00000469565 ABCC8Q09428 1581 aa23.4■■□□□ 1.34
LMNA-210ENST00000469565 CYB5RLQ6IPT4 315 aa23.39■■□□□ 1.33
LMNA-210ENST00000469565 TOPBP1Q92547 1522 aa23.38■■□□□ 1.33
LMNA-210ENST00000469565 DNMBPQ6XZF7 1577 aa23.38■■□□□ 1.33
LMNA-210ENST00000469565 CUX1P39880 1505 aa23.33■■□□□ 1.33
LMNA-210ENST00000469565 WRNQ14191 1432 aaPredicted RBP eCLIP23.33■■□□□ 1.325e-6■■■■■ 29.2
LMNA-210ENST00000469565 TRHP20396 242 aaPredicted RBP23.31■■□□□ 1.32
LMNA-210ENST00000469565 EIF4G3O43432 1585 aaKnown RBP23.28■■□□□ 1.32
LMNA-210ENST00000469565 SYNJ1O43426 1573 aa23.25■■□□□ 1.31
LMNA-210ENST00000469565 FGD5Q6ZNL6 1462 aa23.22■■□□□ 1.31
LMNA-210ENST00000469565 TOP2BQ02880 1626 aa23.22■■□□□ 1.31
LMNA-210ENST00000469565 BIVM-ERCC5R4GMW8 1640 aa23.22■■□□□ 1.31
LMNA-210ENST00000469565 CHD1O14646 1710 aa23.22■■□□□ 1.31
LMNA-210ENST00000469565 AQRO60306 1485 aaKnown RBP eCLIP23.19■■□□□ 1.37e-18■■■■■ 37
LMNA-210ENST00000469565 POLA1P09884 1462 aaPredicted RBP23.19■■□□□ 1.3
LMNA-210ENST00000469565 ARAP1Q96P48 1450 aa23.19■■□□□ 1.3
LMNA-210ENST00000469565 FBLN2P98095 1184 aa23.19■■□□□ 1.3
LMNA-210ENST00000469565 SOGA1O94964 1423 aa23.16■■□□□ 1.3
LMNA-210ENST00000469565 RAD54L2Q9Y4B4 1467 aa23.14■■□□□ 1.29
LMNA-210ENST00000469565 TARBP1Q13395 1621 aaKnown RBP23.14■■□□□ 1.29
LMNA-210ENST00000469565 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
LMNA-210ENST00000469565 AEBP2Q6ZN18 517 aaPredicted RBP23.03■■□□□ 1.28
LMNA-210ENST00000469565 TDRD9Q8NDG6 1382 aaKnown RBP23■■□□□ 1.27
LMNA-210ENST00000469565 WDR97A6NE52 1622 aa22.97■■□□□ 1.27
LMNA-210ENST00000469565 ABCA10Q8WWZ4 1543 aa22.97■■□□□ 1.27
LMNA-210ENST00000469565 CHMP7Q8WUX9 453 aaPredicted RBP22.93■■□□□ 1.26
LMNA-210ENST00000469565 CLASP1Q7Z460 1538 aa22.92■■□□□ 1.26
LMNA-210ENST00000469565 SNAPC4Q5SXM2 1469 aa22.92■■□□□ 1.26
LMNA-210ENST00000469565 GAPVD1Q14C86 1478 aa22.88■■□□□ 1.25
LMNA-210ENST00000469565 MAGI1Q96QZ7 1491 aaPredicted RBP22.85■■□□□ 1.25
LMNA-210ENST00000469565 ABCA5Q8WWZ7 1642 aa22.85■■□□□ 1.25
LMNA-210ENST00000469565 PBRM1Q86U86 1689 aa22.84■■□□□ 1.25
LMNA-210ENST00000469565 KIF27Q86VH2 1401 aa22.82■■□□□ 1.24
LMNA-210ENST00000469565 GRIN2BQ13224 1484 aa22.8■■□□□ 1.24
LMNA-210ENST00000469565 SYNJ2O15056 1496 aa22.79■■□□□ 1.24
LMNA-210ENST00000469565 RUSC2Q8N2Y8 1516 aa22.75■■□□□ 1.23
LMNA-210ENST00000469565 FAM9AQ8IZU1 332 aaPredicted RBP22.7■■□□□ 1.22
LMNA-210ENST00000469565 ERICH3Q5RHP9 1530 aa22.7■■□□□ 1.22
LMNA-210ENST00000469565 IGF1RP08069 1367 aa22.67■■□□□ 1.22
LMNA-210ENST00000469565 ADAMTS12P58397 1594 aa22.61■■□□□ 1.21
LMNA-210ENST00000469565 FHAD1B1AJZ9 1412 aa22.6■■□□□ 1.21
LMNA-210ENST00000469565 CUL7Q14999 1698 aa22.58■■□□□ 1.21
LMNA-210ENST00000469565 EEA1Q15075 1411 aa22.58■■□□□ 1.21
LMNA-210ENST00000469565 CSRNP3Q8WYN3 585 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms