RNA–Protein interactions for RNA: ENST00000472034.5

LMNB1-205, Transcript of lamin B1, humanhuman

TSL 3

Gene LMNB1, Length 730 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-205ENST00000472034 AEBP2Q6ZN18 517 aaPredicted RBP15.46■□□□□ 0.07
LMNB1-205ENST00000472034 CHIC1Q5VXU3 224 aa15.22■□□□□ 0.03
LMNB1-205ENST00000472034 PHF23Q9BUL5 403 aaPredicted RBP13.31□□□□□ -0.28
LMNB1-205ENST00000472034 SENP3Q9H4L4 574 aaPredicted RBP13.27□□□□□ -0.29
LMNB1-205ENST00000472034 PLPPR3Q6T4P5 718 aa12.45□□□□□ -0.42
LMNB1-205ENST00000472034 FOXD1Q16676 465 aa12.22□□□□□ -0.45
LMNB1-205ENST00000472034 ADRA2BP18089 450 aa11.77□□□□□ -0.53
LMNB1-205ENST00000472034 PPP6R1Q9UPN7 881 aa11.73□□□□□ -0.53
LMNB1-205ENST00000472034 PIAS4Q8N2W9 510 aaPredicted RBP11.59□□□□□ -0.55
LMNB1-205ENST00000472034 NISCHQ9Y2I1 1504 aa11.44□□□□□ -0.58
LMNB1-205ENST00000472034 MSH5O43196 834 aa11.37□□□□□ -0.59
LMNB1-205ENST00000472034 ABCC9O60706 1549 aa11.3□□□□□ -0.6
LMNB1-205ENST00000472034 DNAJC5BQ9UF47 199 aa11.29□□□□□ -0.6
LMNB1-205ENST00000472034 SCAF1Q9H7N4 1312 aaKnown RBP10.94□□□□□ -0.66
LMNB1-205ENST00000472034 PPP4R3CPQ6ZMV5 832 aa10.92□□□□□ -0.66
LMNB1-205ENST00000472034 NCBP3Q53F19 620 aaKnown RBP10.75□□□□□ -0.69
LMNB1-205ENST00000472034 DNAJC5Q9H3Z4 198 aa10.75□□□□□ -0.69
LMNB1-205ENST00000472034 KCNA4P22459 653 aa10.65□□□□□ -0.7
LMNB1-205ENST00000472034 MAPK8IP2Q13387 824 aaPredicted RBP10.65□□□□□ -0.7
LMNB1-205ENST00000472034 CNKSR2Q8WXI2 1034 aa10.65□□□□□ -0.7
LMNB1-205ENST00000472034 DMRT2Q9Y5R5 561 aa10.55□□□□□ -0.72
LMNB1-205ENST00000472034 CCDC180Q9P1Z9 1646 aa10.49□□□□□ -0.73
LMNB1-205ENST00000472034 NPM3O75607 178 aaKnown RBP10.46□□□□□ -0.73
LMNB1-205ENST00000472034 PABPN1Q86U42 306 aaKnown RBP eCLIP10.45□□□□□ -0.74
LMNB1-205ENST00000472034 RNF216Q9NWF9 866 aaPredicted RBP10.42□□□□□ -0.74
LMNB1-205ENST00000472034 RB1CC1Q8TDY2 1594 aa10.34□□□□□ -0.75
LMNB1-205ENST00000472034 HOXD11P31277 338 aaPredicted RBP10.33□□□□□ -0.76
LMNB1-205ENST00000472034 SLC4A1APQ9BWU0 796 aaKnown RBP10.22□□□□□ -0.77
LMNB1-205ENST00000472034 CECR2Q9BXF3 1484 aa10.21□□□□□ -0.78
LMNB1-205ENST00000472034 POTEDQ86YR6 584 aa10.2□□□□□ -0.78
LMNB1-205ENST00000472034 UNC13AQ9UPW8 1703 aa10.18□□□□□ -0.78
LMNB1-205ENST00000472034 DCAF8L1A6NGE4 600 aa10.17□□□□□ -0.78
LMNB1-205ENST00000472034 BICRAQ9NZM4 1560 aa10.16□□□□□ -0.78
LMNB1-205ENST00000472034 CC2D2AQ9P2K1 1620 aa10.14□□□□□ -0.79
LMNB1-205ENST00000472034 NACADO15069 1562 aa10.09□□□□□ -0.79
LMNB1-205ENST00000472034 TRIM41Q8WV44 630 aa10.06□□□□□ -0.8
LMNB1-205ENST00000472034 DCAF8L2P0C7V8 631 aa10.02□□□□□ -0.81
LMNB1-205ENST00000472034 EHMT2Q96KQ7 1210 aa9.94□□□□□ -0.82
LMNB1-205ENST00000472034 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.93□□□□□ -0.825e-7■■□□□ 13.5
LMNB1-205ENST00000472034 EIF4G1Q04637 1599 aaKnown RBP9.92□□□□□ -0.82
LMNB1-205ENST00000472034 CUX2O14529 1486 aa9.91□□□□□ -0.82
LMNB1-205ENST00000472034 FOXD4L1Q9NU39 408 aa9.87□□□□□ -0.83
LMNB1-205ENST00000472034 SLC4A2P04920 1241 aa9.83□□□□□ -0.84
LMNB1-205ENST00000472034 SHROOM4Q9ULL8 1493 aa9.78□□□□□ -0.84
LMNB1-205ENST00000472034 CSRNP3Q8WYN3 585 aa9.77□□□□□ -0.85
LMNB1-205ENST00000472034 ERCC6Q03468 1493 aa9.74□□□□□ -0.85
LMNB1-205ENST00000472034 ZBTB22O15209 634 aa9.73□□□□□ -0.85
LMNB1-205ENST00000472034 MYCNP04198 464 aaPredicted RBP9.73□□□□□ -0.85
LMNB1-205ENST00000472034 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.72□□□□□ -0.85
LMNB1-205ENST00000472034 HNRNPUL2Q1KMD3 747 aaKnown RBP9.72□□□□□ -0.85
LMNB1-205ENST00000472034 MYO15BQ96JP2 1530 aa9.67□□□□□ -0.86
LMNB1-205ENST00000472034 RNF39Q9H2S5 420 aa9.67□□□□□ -0.86
LMNB1-205ENST00000472034 U3KPZ7 1027 aaPredicted RBP9.67□□□□□ -0.86
LMNB1-205ENST00000472034 APLP2Q06481 763 aa9.65□□□□□ -0.86
LMNB1-205ENST00000472034 SAMD1Q6SPF0 538 aaPredicted RBP9.65□□□□□ -0.86
LMNB1-205ENST00000472034 SCRIBQ14160 1630 aa9.64□□□□□ -0.87
LMNB1-205ENST00000472034 C1QBPQ07021 282 aaKnown RBP9.62□□□□□ -0.87
LMNB1-205ENST00000472034 ATXN8OSP0DMR3 200 aa9.55□□□□□ -0.88
LMNB1-205ENST00000472034 NESP48681 1621 aa9.54□□□□□ -0.88
LMNB1-205ENST00000472034 THOC2Q8NI27 1593 aaKnown RBP9.52□□□□□ -0.89
LMNB1-205ENST00000472034 CACNB1Q02641 598 aaPredicted RBP9.46□□□□□ -0.9
LMNB1-205ENST00000472034 CAPN15O75808 1086 aa9.44□□□□□ -0.9
LMNB1-205ENST00000472034 ZNF219Q9P2Y4 722 aaPredicted RBP9.43□□□□□ -0.9
LMNB1-205ENST00000472034 SMARCA2P51531 1590 aa9.42□□□□□ -0.9
LMNB1-205ENST00000472034 BAZ1AQ9NRL2 1556 aaPredicted RBP9.39□□□□□ -0.91
LMNB1-205ENST00000472034 TRHP20396 242 aaPredicted RBP9.39□□□□□ -0.91
LMNB1-205ENST00000472034 SPINK5Q9NQ38 1064 aaPredicted RBP9.38□□□□□ -0.91
LMNB1-205ENST00000472034 RIMBP3CA6NJZ7 1639 aa9.38□□□□□ -0.91
LMNB1-205ENST00000472034 RIMBP3BA6NNM3 1639 aa9.38□□□□□ -0.91
LMNB1-205ENST00000472034 RIMBP3Q9UFD9 1639 aa9.38□□□□□ -0.91
LMNB1-205ENST00000472034 ILDR1Q86SU0 546 aaPredicted RBP9.37□□□□□ -0.91
LMNB1-205ENST00000472034 OSCARQ8IYS5 282 aa9.36□□□□□ -0.91
LMNB1-205ENST00000472034 NCAPD3P42695 1498 aa9.35□□□□□ -0.91
LMNB1-205ENST00000472034 ATF5Q9Y2D1 282 aaPredicted RBP9.34□□□□□ -0.91
LMNB1-205ENST00000472034 KIF21AQ7Z4S6 1674 aa9.34□□□□□ -0.91
LMNB1-205ENST00000472034 ZCCHC6Q5VYS8 1495 aaKnown RBP9.34□□□□□ -0.91
LMNB1-205ENST00000472034 DCAF1Q9Y4B6 1507 aa9.32□□□□□ -0.92
LMNB1-205ENST00000472034 ATAD2BQ9ULI0 1458 aa9.27□□□□□ -0.93
LMNB1-205ENST00000472034 ARHGEF11O15085 1522 aa9.26□□□□□ -0.93
LMNB1-205ENST00000472034 CYB5RLQ6IPT4 315 aa9.26□□□□□ -0.93
LMNB1-205ENST00000472034 POLA2Q14181 598 aa9.23□□□□□ -0.93
LMNB1-205ENST00000472034 LAMC3Q9Y6N6 1575 aa9.22□□□□□ -0.93
LMNB1-205ENST00000472034 DSG3P32926 999 aa9.21□□□□□ -0.94
LMNB1-205ENST00000472034 ABCB7O75027 752 aa9.2□□□□□ -0.94
LMNB1-205ENST00000472034 PDS5BQ9NTI5 1447 aa9.2□□□□□ -0.94
LMNB1-205ENST00000472034 MRC2Q9UBG0 1479 aa9.2□□□□□ -0.94
LMNB1-205ENST00000472034 WDR62O43379 1518 aa9.2□□□□□ -0.94
LMNB1-205ENST00000472034 HMGXB3Q12766 1538 aa9.2□□□□□ -0.94
LMNB1-205ENST00000472034 ZBTB12Q9Y330 459 aaPredicted RBP9.17□□□□□ -0.94
LMNB1-205ENST00000472034 ARAP1Q96P48 1450 aa9.15□□□□□ -0.94
LMNB1-205ENST00000472034 FBLN2P98095 1184 aa9.13□□□□□ -0.95
LMNB1-205ENST00000472034 BAZ1BQ9UIG0 1483 aaKnown RBP9.11□□□□□ -0.95
LMNB1-205ENST00000472034 SMARCA4P51532 1647 aa9.08□□□□□ -0.96
LMNB1-205ENST00000472034 CADPSQ9ULU8 1353 aa9.04□□□□□ -0.96
LMNB1-205ENST00000472034 CEP164Q9UPV0 1460 aa9.02□□□□□ -0.97
LMNB1-205ENST00000472034 ZNF608Q9ULD9 1512 aaPredicted RBP9□□□□□ -0.97
LMNB1-205ENST00000472034 URB2Q14146 1524 aaKnown RBP8.98□□□□□ -0.97
LMNB1-205ENST00000472034 FANCD2Q9BXW9 1451 aa8.96□□□□□ -0.97
LMNB1-205ENST00000472034 MKRN4PQ13434 485 aaPredicted RBP8.95□□□□□ -0.98
LMNB1-205ENST00000472034 KDM4FA0A1W2PPD8 638 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms