RNA–Protein interactions for RNA: ENST00000368299.7

LMNA-205, Transcript of lamin A/C, humanhuman

TSL 1 (best) BASIC

Gene LMNA, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-205ENST00000368299 NISCHQ9Y2I1 1504 aa38.18■■■■□ 3.7
LMNA-205ENST00000368299 CCDC180Q9P1Z9 1646 aa33.01■■■□□ 2.87
LMNA-205ENST00000368299 ZCCHC6Q5VYS8 1495 aaKnown RBP32.19■■■□□ 2.74
LMNA-205ENST00000368299 DCAF1Q9Y4B6 1507 aa31.59■■■□□ 2.65
LMNA-205ENST00000368299 SHROOM4Q9ULL8 1493 aa31.55■■■□□ 2.64
LMNA-205ENST00000368299 DCAF8L2P0C7V8 631 aa31.41■■■□□ 2.62
LMNA-205ENST00000368299 MYO15BQ96JP2 1530 aa31.01■■■□□ 2.55
LMNA-205ENST00000368299 ABCC9O60706 1549 aa30.74■■■□□ 2.51
LMNA-205ENST00000368299 SUPT5HO00267 1087 aaKnown RBP30.66■■■□□ 2.5
LMNA-205ENST00000368299 NACADO15069 1562 aa30.65■■■□□ 2.5
LMNA-205ENST00000368299 SCRIBQ14160 1630 aa30.44■■■□□ 2.46
LMNA-205ENST00000368299 RB1CC1Q8TDY2 1594 aa30.25■■■□□ 2.43
LMNA-205ENST00000368299 RSF1Q96T23 1441 aaPredicted RBP29.85■■■□□ 2.37
LMNA-205ENST00000368299 CHIC1Q5VXU3 224 aa29.64■■■□□ 2.34
LMNA-205ENST00000368299 CECR2Q9BXF3 1484 aa29.62■■■□□ 2.33
LMNA-205ENST00000368299 UNC13AQ9UPW8 1703 aa29.59■■■□□ 2.33
LMNA-205ENST00000368299 MROH2BQ7Z745 1585 aa29.51■■■□□ 2.32
LMNA-205ENST00000368299 BAZ1AQ9NRL2 1556 aaPredicted RBP29.45■■■□□ 2.31
LMNA-205ENST00000368299 BICRAQ9NZM4 1560 aa29.29■■■□□ 2.28
LMNA-205ENST00000368299 WIZO95785 1651 aa29.29■■■□□ 2.28
LMNA-205ENST00000368299 SMARCA4P51532 1647 aa29.22■■■□□ 2.27
LMNA-205ENST00000368299 PABPN1Q86U42 306 aaKnown RBP eCLIP29.12■■■□□ 2.25
LMNA-205ENST00000368299 TOP2AP11388 1531 aaKnown RBP29.02■■■□□ 2.24
LMNA-205ENST00000368299 PEG3Q9GZU2 1588 aa28.85■■■□□ 2.21
LMNA-205ENST00000368299 TRIM41Q8WV44 630 aa28.81■■■□□ 2.2
LMNA-205ENST00000368299 SMARCA2P51531 1590 aa28.75■■■□□ 2.19
LMNA-205ENST00000368299 CCDC88BA6NC98 1476 aa28.74■■■□□ 2.19
LMNA-205ENST00000368299 EIF4G1Q04637 1599 aaKnown RBP28.72■■■□□ 2.19
LMNA-205ENST00000368299 ATAD2BQ9ULI0 1458 aa28.63■■■□□ 2.17
LMNA-205ENST00000368299 LOC105371045A0A1W2PR82 267 aa28.52■■■□□ 2.16
LMNA-205ENST00000368299 BAZ1BQ9UIG0 1483 aaKnown RBP28.5■■■□□ 2.15
LMNA-205ENST00000368299 NCAPD3P42695 1498 aa28.3■■■□□ 2.12
LMNA-205ENST00000368299 ABCC8Q09428 1581 aa28.3■■■□□ 2.12
LMNA-205ENST00000368299 HMGXB3Q12766 1538 aa28.29■■■□□ 2.12
LMNA-205ENST00000368299 FAM9AQ8IZU1 332 aaPredicted RBP28.27■■■□□ 2.12
LMNA-205ENST00000368299 WRNQ14191 1432 aaPredicted RBP eCLIP28.1■■■□□ 2.095e-6■■■■□ 20.9
LMNA-205ENST00000368299 EEA1Q15075 1411 aa28.02■■■□□ 2.08
LMNA-205ENST00000368299 SYNJ1O43426 1573 aa27.91■■■□□ 2.06
LMNA-205ENST00000368299 SOGA1O94964 1423 aa27.91■■■□□ 2.06
LMNA-205ENST00000368299 EHMT2Q96KQ7 1210 aa27.84■■■□□ 2.05
LMNA-205ENST00000368299 PCGF6Q9BYE7 350 aa27.83■■■□□ 2.05
LMNA-205ENST00000368299 CFTRP13569 1480 aa27.82■■■□□ 2.04
LMNA-205ENST00000368299 CC2D2AQ9P2K1 1620 aa27.82■■■□□ 2.04
LMNA-205ENST00000368299 CSRNP3Q8WYN3 585 aa27.8■■■□□ 2.04
LMNA-205ENST00000368299 TOP2BQ02880 1626 aa27.78■■■□□ 2.04
LMNA-205ENST00000368299 RUSC2Q8N2Y8 1516 aa27.74■■■□□ 2.03
LMNA-205ENST00000368299 BIVM-ERCC5R4GMW8 1640 aa27.72■■■□□ 2.03
LMNA-205ENST00000368299 TRIM26Q12899 539 aaPredicted RBP27.71■■■□□ 2.03
LMNA-205ENST00000368299 TNIKQ9UKE5 1360 aa27.66■■■□□ 2.02
LMNA-205ENST00000368299 PRDM2Q13029 1718 aa27.65■■■□□ 2.02
LMNA-205ENST00000368299 GOLGA3Q08378 1498 aa27.63■■■□□ 2.01
LMNA-205ENST00000368299 HRCP23327 699 aa27.62■■■□□ 2.01
LMNA-205ENST00000368299 CADPSQ9ULU8 1353 aa27.62■■■□□ 2.01
LMNA-205ENST00000368299 CEP164Q9UPV0 1460 aa27.58■■■□□ 2.01
LMNA-205ENST00000368299 KIF21BO75037 1637 aa27.57■■■□□ 2
LMNA-205ENST00000368299 CUX1P39880 1505 aa27.56■■■□□ 2
LMNA-205ENST00000368299 CEP162Q5TB80 1403 aa27.54■■■□□ 2
LMNA-205ENST00000368299 UBTFP17480 764 aaKnown RBP27.5■■□□□ 1.99
LMNA-205ENST00000368299 KIF27Q86VH2 1401 aa27.35■■□□□ 1.97
LMNA-205ENST00000368299 RAPGEF2Q9Y4G8 1499 aa27.31■■□□□ 1.96
LMNA-205ENST00000368299 FANCD2Q9BXW9 1451 aa27.3■■□□□ 1.96
LMNA-205ENST00000368299 ERICH3Q5RHP9 1530 aa27.3■■□□□ 1.96
LMNA-205ENST00000368299 PRXQ9BXM0 1461 aa27.28■■□□□ 1.96
LMNA-205ENST00000368299 LAMC3Q9Y6N6 1575 aa27.23■■□□□ 1.95
LMNA-205ENST00000368299 CLIP1P30622 1438 aa27.21■■□□□ 1.95
LMNA-205ENST00000368299 FGD5Q6ZNL6 1462 aa27.18■■□□□ 1.94
LMNA-205ENST00000368299 NESP48681 1621 aa27.15■■□□□ 1.94
LMNA-205ENST00000368299 DNMBPQ6XZF7 1577 aa27.15■■□□□ 1.94
LMNA-205ENST00000368299 CUX2O14529 1486 aa27.12■■□□□ 1.93
LMNA-205ENST00000368299 PPARGC1BQ86YN6 1023 aaKnown RBP27.11■■□□□ 1.93
LMNA-205ENST00000368299 TOPBP1Q92547 1522 aa27.06■■□□□ 1.92
LMNA-205ENST00000368299 VPS8Q8N3P4 1428 aa27.05■■□□□ 1.92
LMNA-205ENST00000368299 IGF1RP08069 1367 aa27.03■■□□□ 1.92
LMNA-205ENST00000368299 PDS5BQ9NTI5 1447 aa27.03■■□□□ 1.92
LMNA-205ENST00000368299 POLA1P09884 1462 aaPredicted RBP26.98■■□□□ 1.91
LMNA-205ENST00000368299 ABCA10Q8WWZ4 1543 aa26.97■■□□□ 1.91
LMNA-205ENST00000368299 DNAJC5BQ9UF47 199 aa26.93■■□□□ 1.9
LMNA-205ENST00000368299 ZEB1P37275 1124 aaPredicted RBP26.93■■□□□ 1.9
LMNA-205ENST00000368299 CARMIL1Q5VZK9 1371 aa26.91■■□□□ 1.9
LMNA-205ENST00000368299 URB2Q14146 1524 aaKnown RBP26.91■■□□□ 1.9
LMNA-205ENST00000368299 RAD54L2Q9Y4B4 1467 aa26.88■■□□□ 1.89
LMNA-205ENST00000368299 RANGAP1P46060 587 aaPredicted RBP26.86■■□□□ 1.89
LMNA-205ENST00000368299 APLP2Q06481 763 aa26.85■■□□□ 1.89
LMNA-205ENST00000368299 ARAP1Q96P48 1450 aa26.84■■□□□ 1.89
LMNA-205ENST00000368299 KIF21AQ7Z4S6 1674 aa26.8■■□□□ 1.88
LMNA-205ENST00000368299 TTBK1Q5TCY1 1321 aaPredicted RBP26.8■■□□□ 1.88
LMNA-205ENST00000368299 WDR97A6NE52 1622 aa26.78■■□□□ 1.88
LMNA-205ENST00000368299 CUL7Q14999 1698 aa26.76■■□□□ 1.87
LMNA-205ENST00000368299 ARHGAP35Q9NRY4 1499 aa26.75■■□□□ 1.87
LMNA-205ENST00000368299 ABCA5Q8WWZ7 1642 aa26.67■■□□□ 1.86
LMNA-205ENST00000368299 MRC2Q9UBG0 1479 aa26.63■■□□□ 1.85
LMNA-205ENST00000368299 GAPVD1Q14C86 1478 aa26.62■■□□□ 1.85
LMNA-205ENST00000368299 TDRD9Q8NDG6 1382 aaKnown RBP26.59■■□□□ 1.85
LMNA-205ENST00000368299 TARBP1Q13395 1621 aaKnown RBP26.59■■□□□ 1.85
LMNA-205ENST00000368299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.52■■□□□ 1.84
LMNA-205ENST00000368299 CCER1Q8TC90 406 aaPredicted RBP26.52■■□□□ 1.84
LMNA-205ENST00000368299 EFCAB5A4FU69 1503 aa26.51■■□□□ 1.83
LMNA-205ENST00000368299 CTTNBP2Q8WZ74 1663 aa26.51■■□□□ 1.83
LMNA-205ENST00000368299 FHAD1B1AJZ9 1412 aa26.5■■□□□ 1.83
LMNA-205ENST00000368299 MAP3K1Q13233 1512 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms