Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SNRPA1-205ENST00000558036 2108 ntTSL 221.54■■□□□ 1.047e-6■□□□□ 8.4
LIN28BQ6ZN17 SNRPA1-203ENST00000540017 506 ntTSL 1 (best)20.54■□□□□ 0.887e-6■□□□□ 8.4
LIN28BQ6ZN17 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.827e-6■□□□□ 8.4
LIN28BQ6ZN17 SNRPA1-202ENST00000394082 556 ntTSL 1 (best)20.15■□□□□ 0.827e-6■□□□□ 8.4
LIN28BQ6ZN17 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.727e-6■□□□□ 8.4
LIN28BQ6ZN17 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.457e-6■□□□□ 8.4
LIN28BQ6ZN17 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.427e-6■□□□□ 8.4
LIN28BQ6ZN17 SPCS3-204ENST00000513139 589 ntTSL 216.32■□□□□ 0.27e-6■□□□□ 8.4
LIN28BQ6ZN17 SNRPA1-207ENST00000559309 924 ntTSL 516.17■□□□□ 0.187e-6■□□□□ 8.4
LIN28BQ6ZN17 MON2-205ENST00000547095 5708 ntTSL 1 (best)15.94■□□□□ 0.147e-6■□□□□ 8.4
LIN28BQ6ZN17 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.87■□□□□ 0.137e-6■□□□□ 8.4
LIN28BQ6ZN17 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.39■□□□□ 0.057e-6■□□□□ 8.4
LIN28BQ6ZN17 UBXN2A-203ENST00000446425 2195 ntTSL 1 (best)15.19■□□□□ 0.027e-6■□□□□ 8.4
LIN28BQ6ZN17 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.03■□□□□ -07e-6■□□□□ 8.4
LIN28BQ6ZN17 HDAC6-220ENST00000477528 4832 ntTSL 1 (best)14.24□□□□□ -0.137e-6■□□□□ 8.4
LIN28BQ6ZN17 HDAC6-230ENST00000488543 2484 ntTSL 212.78□□□□□ -0.367e-6■□□□□ 8.4
LIN28BQ6ZN17 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.377e-6■□□□□ 8.4
LIN28BQ6ZN17 CNOT1-210ENST00000567133 553 ntTSL 512.43□□□□□ -0.427e-6■□□□□ 8.4
LIN28BQ6ZN17 HDAC6-201ENST00000334136 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.467e-6■□□□□ 8.4
LIN28BQ6ZN17 MON2-212ENST00000552115 3760 ntTSL 5 BASIC11.87□□□□□ -0.517e-6■□□□□ 8.4
LIN28BQ6ZN17 ATP5F1-203ENST00000464154 621 ntTSL 211.79□□□□□ -0.527e-6■□□□□ 8.4
LIN28BQ6ZN17 SNRPA1-212ENST00000560496 824 ntTSL 511.68□□□□□ -0.547e-6■□□□□ 8.4
LIN28BQ6ZN17 SNRPA1-211ENST00000560433 2440 ntTSL 211.39□□□□□ -0.597e-6■□□□□ 8.4
LIN28BQ6ZN17 HDAC6-203ENST00000376619 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.637e-6■□□□□ 8.4
LIN28BQ6ZN17 HDAC6-228ENST00000486227 4718 ntTSL 210.83□□□□□ -0.687e-6■□□□□ 8.4
LIN28BQ6ZN17 SNRPA1-208ENST00000559686 625 ntTSL 210.67□□□□□ -0.77e-6■□□□□ 8.4
LIN28BQ6ZN17 MON2-214ENST00000641654 10382 ntBASIC9.64□□□□□ -0.877e-6■□□□□ 8.4
LIN28BQ6ZN17 MRPS30-204ENST00000515647 733 ntTSL 38.62□□□□□ -1.037e-6■□□□□ 8.4
LIN28BQ6ZN17 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.237e-6■□□□□ 8.4
LIN28BQ6ZN17 SNRPA1-209ENST00000560307 433 ntTSL 25.11□□□□□ -1.597e-6■□□□□ 8.4
LIN28BQ6ZN17 RPS2-217ENST00000563194 170 ntTSL 52.34□□□□□ -2.034e-17■□□□□ 8.4
LIN28BQ6ZN17 SNRNP200-203ENST00000480242 3409 ntTSL 28.2□□□□□ -1.13e-8■□□□□ 8.4
LIN28BQ6ZN17 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.143e-12■□□□□ 8.3
LIN28BQ6ZN17 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC27.76■■■□□ 2.039e-8■□□□□ 8.3
LIN28BQ6ZN17 TXNL4A-202ENST00000355491 803 ntTSL 1 (best)24.13■■□□□ 1.459e-8■□□□□ 8.3
LIN28BQ6ZN17 TXNL4A-204ENST00000585769 988 ntTSL 223.76■■□□□ 1.399e-8■□□□□ 8.3
LIN28BQ6ZN17 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.06■■□□□ 1.289e-8■□□□□ 8.3
LIN28BQ6ZN17 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.22■□□□□ 0.999e-8■□□□□ 8.3
LIN28BQ6ZN17 TXNL4A-206ENST00000586612 448 ntTSL 319.68■□□□□ 0.749e-8■□□□□ 8.3
LIN28BQ6ZN17 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.69■□□□□ 0.429e-8■□□□□ 8.3
LIN28BQ6ZN17 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.339e-8■□□□□ 8.3
LIN28BQ6ZN17 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC13.19□□□□□ -0.34e-9■□□□□ 8.3
LIN28BQ6ZN17 AKR1C1-204ENST00000476100 713 ntTSL 211.85□□□□□ -0.519e-8■□□□□ 8.3
LIN28BQ6ZN17 AKR1C1-203ENST00000442997 744 ntTSL 311.6□□□□□ -0.559e-8■□□□□ 8.3
LIN28BQ6ZN17 HSPA8-215ENST00000532091 2301 ntTSL 59.13□□□□□ -0.954e-9■□□□□ 8.3
LIN28BQ6ZN17 AKR1C1-205ENST00000477661 2637 ntTSL 57.59□□□□□ -1.199e-8■□□□□ 8.3
LIN28BQ6ZN17 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.29e-8■□□□□ 8.3
LIN28BQ6ZN17 PTPRK-211ENST00000429595 558 ntTSL 37.29□□□□□ -1.249e-8■□□□□ 8.3
LIN28BQ6ZN17 HSPA8-209ENST00000526862 504 ntTSL 35.29□□□□□ -1.564e-9■□□□□ 8.3
LIN28BQ6ZN17 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.77□□□□□ -1.819e-8■□□□□ 8.3
LIN28BQ6ZN17 AP005119.2-201ENST00000579735 1105 ntBASIC5.25□□□□□ -1.579e-8■□□□□ 8.3
LIN28BQ6ZN17 RPL34-207ENST00000506397 549 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.271e-15■□□□□ 8.3
LIN28BQ6ZN17 RPL34-205ENST00000503574 2627 ntTSL 29.27□□□□□ -0.931e-15■□□□□ 8.3
LIN28BQ6ZN17 RPL34-201ENST00000394665 529 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.961e-15■□□□□ 8.3
LIN28BQ6ZN17 RPL34-204ENST00000502534 560 ntAPPRIS P1 TSL 4 BASIC9.04□□□□□ -0.961e-15■□□□□ 8.3
LIN28BQ6ZN17 RPL34-206ENST00000504231 629 ntTSL 1 (best)9.04□□□□□ -0.961e-15■□□□□ 8.3
LIN28BQ6ZN17 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.191e-15■□□□□ 8.3
LIN28BQ6ZN17 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.311e-15■□□□□ 8.3
LIN28BQ6ZN17 ASPH-220ENST00000522036 663 ntTSL 37.9□□□□□ -1.146e-8■□□□□ 8.3
LIN28BQ6ZN17 GNAS-253ENST00000493958 534 ntTSL 212.37□□□□□ -0.433e-9■□□□□ 8.3
LIN28BQ6ZN17 SLC5A6-213ENST00000461757 2307 ntTSL 217.19■□□□□ 0.341e-8■□□□□ 8.3
LIN28BQ6ZN17 HBG2-201ENST00000336906 602 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.583e-55■□□□□ 8.3
LIN28BQ6ZN17 HBG2-204ENST00000444587 307 ntTSL 2 BASIC7.46□□□□□ -1.223e-55■□□□□ 8.3
LIN28BQ6ZN17 HECTD1-211ENST00000555915 775 ntTSL 59.62□□□□□ -0.871e-7■□□□□ 8.3
LIN28BQ6ZN17 HECTD1-205ENST00000554027 556 ntTSL 24.21□□□□□ -1.741e-7■□□□□ 8.3
LIN28BQ6ZN17 APOC4-APOC2-201ENST00000585685 1829 ntTSL 516.43■□□□□ 0.221e-14■□□□□ 8.3
LIN28BQ6ZN17 APOC2-201ENST00000252490 727 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.21e-14■□□□□ 8.3
LIN28BQ6ZN17 APOC4-APOC2-202ENST00000589057 680 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.361e-14■□□□□ 8.3
LIN28BQ6ZN17 APOC2-202ENST00000585786 880 ntTSL 2 BASIC9.56□□□□□ -0.881e-14■□□□□ 8.3
LIN28BQ6ZN17 APOC2-204ENST00000591597 447 ntTSL 5 BASIC9.56□□□□□ -0.881e-14■□□□□ 8.3
LIN28BQ6ZN17 APOC2-205ENST00000592257 444 ntTSL 3 BASIC7.32□□□□□ -1.241e-14■□□□□ 8.3
LIN28BQ6ZN17 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.621e-14■□□□□ 8.3
LIN28BQ6ZN17 EIF2B1-206ENST00000543940 423 ntTSL 325.4■■□□□ 1.662e-7■□□□□ 8.2
LIN28BQ6ZN17 EIF2B1-202ENST00000452159 622 ntTSL 223.86■■□□□ 1.412e-7■□□□□ 8.2
LIN28BQ6ZN17 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.1■□□□□ 0.972e-7■□□□□ 8.2
LIN28BQ6ZN17 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.782e-7■□□□□ 8.2
LIN28BQ6ZN17 EFTUD2-215ENST00000589825 600 ntTSL 218.16■□□□□ 0.52e-7■□□□□ 8.2
LIN28BQ6ZN17 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.95■□□□□ 0.37e-6■□□□□ 8.2
LIN28BQ6ZN17 EIF2B1-203ENST00000534960 618 ntTSL 516.08■□□□□ 0.162e-7■□□□□ 8.2
LIN28BQ6ZN17 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC15.13■□□□□ 0.012e-7■□□□□ 8.2
LIN28BQ6ZN17 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.017e-6■□□□□ 8.2
LIN28BQ6ZN17 CDK4-214ENST00000552862 447 ntTSL 314.27□□□□□ -0.132e-7■□□□□ 8.2
LIN28BQ6ZN17 SDHA-216ENST00000514027 2209 ntTSL 212.31□□□□□ -0.442e-7■□□□□ 8.2
LIN28BQ6ZN17 MTA2-202ENST00000524902 2577 ntTSL 1 (best) BASIC12.16□□□□□ -0.467e-6■□□□□ 8.2
LIN28BQ6ZN17 EFTUD2-224ENST00000592701 562 ntTSL 411.61□□□□□ -0.552e-7■□□□□ 8.2
LIN28BQ6ZN17 MTA2-205ENST00000531179 625 ntTSL 311.26□□□□□ -0.617e-6■□□□□ 8.2
LIN28BQ6ZN17 SDHA-217ENST00000514233 558 ntTSL 410.42□□□□□ -0.742e-7■□□□□ 8.2
LIN28BQ6ZN17 EFTUD2-212ENST00000589211 584 ntTSL 49.29□□□□□ -0.922e-7■□□□□ 8.2
LIN28BQ6ZN17 EFTUD2-222ENST00000592408 561 ntTSL 49.02□□□□□ -0.972e-7■□□□□ 8.2
LIN28BQ6ZN17 EFTUD2-211ENST00000588374 524 ntTSL 37.6□□□□□ -1.192e-7■□□□□ 8.2
LIN28BQ6ZN17 EFTUD2-225ENST00000593072 551 ntTSL 57.48□□□□□ -1.212e-7■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-220ENST00000556433 1259 ntTSL 325.92■■□□□ 1.746e-6■□□□□ 8.2
LIN28BQ6ZN17 CPVL-205ENST00000437527 524 ntTSL 418.4■□□□□ 0.546e-6■□□□□ 8.2
LIN28BQ6ZN17 CPVL-212ENST00000488891 696 ntTSL 517.63■□□□□ 0.416e-6■□□□□ 8.2
LIN28BQ6ZN17 ADI1-203ENST00000415131 654 ntTSL 317.43■□□□□ 0.386e-6■□□□□ 8.2
LIN28BQ6ZN17 GPT2-204ENST00000562801 2092 ntTSL 215.98■□□□□ 0.156e-6■□□□□ 8.2
LIN28BQ6ZN17 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.066e-6■□□□□ 8.2
LIN28BQ6ZN17 CPVL-209ENST00000455544 571 ntTSL 415.13■□□□□ 0.016e-6■□□□□ 8.2
LIN28BQ6ZN17 SPTAN1-230ENST00000636257 100 ntTSL 514.96□□□□□ -0.016e-6■□□□□ 8.2
LIN28BQ6ZN17 SLC39A14-205ENST00000517370 839 ntTSL 314.88□□□□□ -0.036e-9■□□□□ 8.2
Retrieved 100 of 21,972 protein–RNA pairs in 544.7 ms