RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 NISCHQ9Y2I1 1504 aa44.65■■■■■ 4.74
SNRPA1-203ENST00000540017 CCDC180Q9P1Z9 1646 aa39.66■■■■□ 3.94
SNRPA1-203ENST00000540017 ABCC9O60706 1549 aa38.95■■■■□ 3.83
SNRPA1-203ENST00000540017 RB1CC1Q8TDY2 1594 aa37.37■■■■□ 3.57
SNRPA1-203ENST00000540017 DCAF8L2P0C7V8 631 aa37.35■■■■□ 3.57
SNRPA1-203ENST00000540017 NACADO15069 1562 aa37.31■■■■□ 3.56
SNRPA1-203ENST00000540017 ZCCHC6Q5VYS8 1495 aaKnown RBP37.18■■■■□ 3.54
SNRPA1-203ENST00000540017 MYO15BQ96JP2 1530 aa37.06■■■■□ 3.52
SNRPA1-203ENST00000540017 DCAF1Q9Y4B6 1507 aa36.9■■■■□ 3.5
SNRPA1-203ENST00000540017 UNC13AQ9UPW8 1703 aa36.59■■■■□ 3.45
SNRPA1-203ENST00000540017 PABPN1Q86U42 306 aaKnown RBP eCLIP36.43■■■■□ 3.42
SNRPA1-203ENST00000540017 BICRAQ9NZM4 1560 aa36.33■■■■□ 3.41
SNRPA1-203ENST00000540017 SCRIBQ14160 1630 aa36.26■■■■□ 3.39
SNRPA1-203ENST00000540017 DNAJC5BQ9UF47 199 aa35.9■■■■□ 3.34
SNRPA1-203ENST00000540017 SHROOM4Q9ULL8 1493 aa35.8■■■■□ 3.32
SNRPA1-203ENST00000540017 EIF4G1Q04637 1599 aaKnown RBP35.33■■■■□ 3.25
SNRPA1-203ENST00000540017 CC2D2AQ9P2K1 1620 aa35.21■■■■□ 3.23
SNRPA1-203ENST00000540017 CECR2Q9BXF3 1484 aa34.97■■■■□ 3.19
SNRPA1-203ENST00000540017 SMARCA4P51532 1647 aa34.66■■■■□ 3.14
SNRPA1-203ENST00000540017 BAZ1AQ9NRL2 1556 aaPredicted RBP34.57■■■■□ 3.13
SNRPA1-203ENST00000540017 ATAD2BQ9ULI0 1458 aa34.5■■■■□ 3.11
SNRPA1-203ENST00000540017 NCAPD3P42695 1498 aa34.46■■■■□ 3.11
SNRPA1-203ENST00000540017 MROH2BQ7Z745 1585 aa34.45■■■■□ 3.11
SNRPA1-203ENST00000540017 SMARCA2P51531 1590 aa34.4■■■■□ 3.1
SNRPA1-203ENST00000540017 PEG3Q9GZU2 1588 aa34.3■■■■□ 3.08
SNRPA1-203ENST00000540017 HMGXB3Q12766 1538 aa34.26■■■■□ 3.08
SNRPA1-203ENST00000540017 BAZ1BQ9UIG0 1483 aaKnown RBP34.18■■■■□ 3.06
SNRPA1-203ENST00000540017 WIZO95785 1651 aa34.07■■■■□ 3.04
SNRPA1-203ENST00000540017 RSF1Q96T23 1441 aaPredicted RBP34.03■■■■□ 3.04
SNRPA1-203ENST00000540017 NESP48681 1621 aa33.72■■■□□ 2.99
SNRPA1-203ENST00000540017 TOP2AP11388 1531 aaKnown RBP33.66■■■□□ 2.98
SNRPA1-203ENST00000540017 LAMC3Q9Y6N6 1575 aa33.53■■■□□ 2.96
SNRPA1-203ENST00000540017 ERCC6Q03468 1493 aa33.51■■■□□ 2.96
SNRPA1-203ENST00000540017 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
SNRPA1-203ENST00000540017 PDS5BQ9NTI5 1447 aa33.31■■■□□ 2.92
SNRPA1-203ENST00000540017 CCDC88BA6NC98 1476 aa33.31■■■□□ 2.92
SNRPA1-203ENST00000540017 KIF21AQ7Z4S6 1674 aa33.27■■■□□ 2.92
SNRPA1-203ENST00000540017 CFTRP13569 1480 aa33.25■■■□□ 2.91
SNRPA1-203ENST00000540017 CUX2O14529 1486 aa33.18■■■□□ 2.9
SNRPA1-203ENST00000540017 THOC2Q8NI27 1593 aaKnown RBP33.17■■■□□ 2.9
SNRPA1-203ENST00000540017 SUPT5HO00267 1087 aaKnown RBP33.14■■■□□ 2.9
SNRPA1-203ENST00000540017 FANCD2Q9BXW9 1451 aa33.08■■■□□ 2.89
SNRPA1-203ENST00000540017 CEP164Q9UPV0 1460 aa33.02■■■□□ 2.88
SNRPA1-203ENST00000540017 MRC2Q9UBG0 1479 aa32.99■■■□□ 2.87
SNRPA1-203ENST00000540017 PRDM2Q13029 1718 aa32.94■■■□□ 2.86
SNRPA1-203ENST00000540017 WDR62O43379 1518 aa32.89■■■□□ 2.86
SNRPA1-203ENST00000540017 URB2Q14146 1524 aaKnown RBP32.79■■■□□ 2.84
SNRPA1-203ENST00000540017 TOPBP1Q92547 1522 aa32.56■■■□□ 2.8
SNRPA1-203ENST00000540017 DNMBPQ6XZF7 1577 aa32.49■■■□□ 2.79
SNRPA1-203ENST00000540017 ABCC8Q09428 1581 aa32.47■■■□□ 2.79
SNRPA1-203ENST00000540017 IFT140Q96RY7 1462 aa32.33■■■□□ 2.77
SNRPA1-203ENST00000540017 CUX1P39880 1505 aa32.31■■■□□ 2.76
SNRPA1-203ENST00000540017 DNAJC5Q9H3Z4 198 aa32.28■■■□□ 2.76
SNRPA1-203ENST00000540017 POLA1P09884 1462 aaPredicted RBP32.28■■■□□ 2.76
SNRPA1-203ENST00000540017 ZNF608Q9ULD9 1512 aaPredicted RBP32.26■■■□□ 2.76
SNRPA1-203ENST00000540017 TARBP1Q13395 1621 aaKnown RBP32.22■■■□□ 2.75
SNRPA1-203ENST00000540017 FGD5Q6ZNL6 1462 aa32.19■■■□□ 2.74
SNRPA1-203ENST00000540017 RAD54L2Q9Y4B4 1467 aa32.17■■■□□ 2.74
SNRPA1-203ENST00000540017 SOGA1O94964 1423 aa32.14■■■□□ 2.74
SNRPA1-203ENST00000540017 EIF4G3O43432 1585 aaKnown RBP32.08■■■□□ 2.73
SNRPA1-203ENST00000540017 AQRO60306 1485 aaKnown RBP eCLIP32.07■■■□□ 2.728e-7■■□□□ 14.1
SNRPA1-203ENST00000540017 WRNQ14191 1432 aaPredicted RBP eCLIP32.05■■■□□ 2.72
SNRPA1-203ENST00000540017 SYNJ1O43426 1573 aa32.01■■■□□ 2.71
SNRPA1-203ENST00000540017 TDRD9Q8NDG6 1382 aaKnown RBP32■■■□□ 2.71
SNRPA1-203ENST00000540017 TOP2BQ02880 1626 aa31.98■■■□□ 2.71
SNRPA1-203ENST00000540017 BIVM-ERCC5R4GMW8 1640 aa31.97■■■□□ 2.71
SNRPA1-203ENST00000540017 WDR97A6NE52 1622 aa31.92■■■□□ 2.7
SNRPA1-203ENST00000540017 ABCA10Q8WWZ4 1543 aa31.86■■■□□ 2.69
SNRPA1-203ENST00000540017 OSCARQ8IYS5 282 aa31.82■■■□□ 2.68
SNRPA1-203ENST00000540017 GAPVD1Q14C86 1478 aa31.76■■■□□ 2.67
SNRPA1-203ENST00000540017 ABCA5Q8WWZ7 1642 aa31.75■■■□□ 2.67
SNRPA1-203ENST00000540017 GRIN2BQ13224 1484 aa31.74■■■□□ 2.67
SNRPA1-203ENST00000540017 SNAPC4Q5SXM2 1469 aa31.74■■■□□ 2.67
SNRPA1-203ENST00000540017 CHD1O14646 1710 aa31.69■■■□□ 2.66
SNRPA1-203ENST00000540017 PBRM1Q86U86 1689 aa31.68■■■□□ 2.66
SNRPA1-203ENST00000540017 FBLN2P98095 1184 aa31.66■■■□□ 2.66
SNRPA1-203ENST00000540017 MAGI1Q96QZ7 1491 aaPredicted RBP31.65■■■□□ 2.66
SNRPA1-203ENST00000540017 SYNJ2O15056 1496 aa31.55■■■□□ 2.64
SNRPA1-203ENST00000540017 CHMP7Q8WUX9 453 aaPredicted RBP31.54■■■□□ 2.64
SNRPA1-203ENST00000540017 ERICH3Q5RHP9 1530 aa31.45■■■□□ 2.63
SNRPA1-203ENST00000540017 ADAMTS12P58397 1594 aa31.44■■■□□ 2.62
SNRPA1-203ENST00000540017 FHAD1B1AJZ9 1412 aa31.38■■■□□ 2.61
SNRPA1-203ENST00000540017 CLASP1Q7Z460 1538 aa31.36■■■□□ 2.61
SNRPA1-203ENST00000540017 GRIN2AQ12879 1464 aa31.35■■■□□ 2.61
SNRPA1-203ENST00000540017 KIF27Q86VH2 1401 aa31.35■■■□□ 2.61
SNRPA1-203ENST00000540017 RIMBP3CA6NJZ7 1639 aa31.34■■■□□ 2.61
SNRPA1-203ENST00000540017 RIMBP3BA6NNM3 1639 aa31.34■■■□□ 2.61
SNRPA1-203ENST00000540017 RIMBP3Q9UFD9 1639 aa31.34■■■□□ 2.61
SNRPA1-203ENST00000540017 ARHGEF11O15085 1522 aa31.32■■■□□ 2.6
SNRPA1-203ENST00000540017 IGF1RP08069 1367 aa31.3■■■□□ 2.6
SNRPA1-203ENST00000540017 TRIM41Q8WV44 630 aa31.25■■■□□ 2.59
SNRPA1-203ENST00000540017 CEP170Q5SW79 1584 aa31.23■■■□□ 2.59
SNRPA1-203ENST00000540017 NUP160Q12769 1436 aa31.23■■■□□ 2.59
SNRPA1-203ENST00000540017 RUSC2Q8N2Y8 1516 aa31.18■■■□□ 2.58
SNRPA1-203ENST00000540017 CUL7Q14999 1698 aa31.14■■■□□ 2.58
SNRPA1-203ENST00000540017 ARAP1Q96P48 1450 aa31.08■■■□□ 2.57
SNRPA1-203ENST00000540017 CARMIL1Q5VZK9 1371 aa31.08■■■□□ 2.57
SNRPA1-203ENST00000540017 CYB5RLQ6IPT4 315 aa31.05■■■□□ 2.56
SNRPA1-203ENST00000540017 SHROOM2Q13796 1616 aa30.98■■■□□ 2.55
SNRPA1-203ENST00000540017 ERCC6L2Q5T890 1561 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms