RNA–Protein interactions for RNA: ENST00000560433.5

SNRPA1-211, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 2,440 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-211ENST00000560433 NISCHQ9Y2I1 1504 aa24.3■■□□□ 1.48
SNRPA1-211ENST00000560433 CCDC180Q9P1Z9 1646 aa20.99■□□□□ 0.95
SNRPA1-211ENST00000560433 DCAF8L2P0C7V8 631 aa20.45■□□□□ 0.86
SNRPA1-211ENST00000560433 ZCCHC6Q5VYS8 1495 aaKnown RBP20.4■□□□□ 0.86
SNRPA1-211ENST00000560433 SHROOM4Q9ULL8 1493 aa20.26■□□□□ 0.83
SNRPA1-211ENST00000560433 ABCC9O60706 1549 aa20.13■□□□□ 0.81
SNRPA1-211ENST00000560433 DCAF1Q9Y4B6 1507 aa19.91■□□□□ 0.78
SNRPA1-211ENST00000560433 MYO15BQ96JP2 1530 aa19.6■□□□□ 0.73
SNRPA1-211ENST00000560433 SCRIBQ14160 1630 aa19.6■□□□□ 0.73
SNRPA1-211ENST00000560433 NACADO15069 1562 aa19.58■□□□□ 0.72
SNRPA1-211ENST00000560433 SUPT5HO00267 1087 aaKnown RBP19.51■□□□□ 0.71
SNRPA1-211ENST00000560433 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
SNRPA1-211ENST00000560433 UNC13AQ9UPW8 1703 aa19.15■□□□□ 0.66
SNRPA1-211ENST00000560433 PABPN1Q86U42 306 aaKnown RBP eCLIP19.12■□□□□ 0.65
SNRPA1-211ENST00000560433 CECR2Q9BXF3 1484 aa19.03■□□□□ 0.64
SNRPA1-211ENST00000560433 RSF1Q96T23 1441 aaPredicted RBP18.95■□□□□ 0.62
SNRPA1-211ENST00000560433 BICRAQ9NZM4 1560 aa18.93■□□□□ 0.62
SNRPA1-211ENST00000560433 MROH2BQ7Z745 1585 aa18.88■□□□□ 0.61
SNRPA1-211ENST00000560433 WIZO95785 1651 aa18.75■□□□□ 0.59
SNRPA1-211ENST00000560433 BAZ1AQ9NRL2 1556 aaPredicted RBP18.71■□□□□ 0.59
SNRPA1-211ENST00000560433 SMARCA4P51532 1647 aa18.66■□□□□ 0.58
SNRPA1-211ENST00000560433 CHIC1Q5VXU3 224 aa18.58■□□□□ 0.56
SNRPA1-211ENST00000560433 TOP2AP11388 1531 aaKnown RBP18.41■□□□□ 0.54
SNRPA1-211ENST00000560433 ATAD2BQ9ULI0 1458 aa18.37■□□□□ 0.53
SNRPA1-211ENST00000560433 EIF4G1Q04637 1599 aaKnown RBP18.36■□□□□ 0.53
SNRPA1-211ENST00000560433 CCDC88BA6NC98 1476 aa18.33■□□□□ 0.53
SNRPA1-211ENST00000560433 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
SNRPA1-211ENST00000560433 SMARCA2P51531 1590 aa18.29■□□□□ 0.52
SNRPA1-211ENST00000560433 BAZ1BQ9UIG0 1483 aaKnown RBP18.28■□□□□ 0.52
SNRPA1-211ENST00000560433 TRIM41Q8WV44 630 aa18.21■□□□□ 0.51
SNRPA1-211ENST00000560433 NCAPD3P42695 1498 aa18.12■□□□□ 0.49
SNRPA1-211ENST00000560433 CC2D2AQ9P2K1 1620 aa18.11■□□□□ 0.49
SNRPA1-211ENST00000560433 ABCC8Q09428 1581 aa18.08■□□□□ 0.48
SNRPA1-211ENST00000560433 FAM9AQ8IZU1 332 aaPredicted RBP18.07■□□□□ 0.48
SNRPA1-211ENST00000560433 HMGXB3Q12766 1538 aa18.05■□□□□ 0.48
SNRPA1-211ENST00000560433 LOC105371045A0A1W2PR82 267 aa18.04■□□□□ 0.48
SNRPA1-211ENST00000560433 EHMT2Q96KQ7 1210 aa17.98■□□□□ 0.47
SNRPA1-211ENST00000560433 DNAJC5BQ9UF47 199 aa17.96■□□□□ 0.47
SNRPA1-211ENST00000560433 WRNQ14191 1432 aaPredicted RBP eCLIP17.83■□□□□ 0.45
SNRPA1-211ENST00000560433 CFTRP13569 1480 aa17.78■□□□□ 0.44
SNRPA1-211ENST00000560433 SYNJ1O43426 1573 aa17.78■□□□□ 0.44
SNRPA1-211ENST00000560433 SOGA1O94964 1423 aa17.75■□□□□ 0.43
SNRPA1-211ENST00000560433 CADPSQ9ULU8 1353 aa17.74■□□□□ 0.43
SNRPA1-211ENST00000560433 RUSC2Q8N2Y8 1516 aa17.72■□□□□ 0.43
SNRPA1-211ENST00000560433 NESP48681 1621 aa17.71■□□□□ 0.43
SNRPA1-211ENST00000560433 CUX1P39880 1505 aa17.61■□□□□ 0.41
SNRPA1-211ENST00000560433 TOP2BQ02880 1626 aa17.6■□□□□ 0.41
SNRPA1-211ENST00000560433 PRDM2Q13029 1718 aa17.58■□□□□ 0.41
SNRPA1-211ENST00000560433 CSRNP3Q8WYN3 585 aa17.57■□□□□ 0.4
SNRPA1-211ENST00000560433 FANCD2Q9BXW9 1451 aa17.57■□□□□ 0.4
SNRPA1-211ENST00000560433 BIVM-ERCC5R4GMW8 1640 aa17.54■□□□□ 0.4
SNRPA1-211ENST00000560433 LAMC3Q9Y6N6 1575 aa17.47■□□□□ 0.39
SNRPA1-211ENST00000560433 UBTFP17480 764 aaKnown RBP17.47■□□□□ 0.39
SNRPA1-211ENST00000560433 EEA1Q15075 1411 aa17.46■□□□□ 0.39
SNRPA1-211ENST00000560433 FGD5Q6ZNL6 1462 aa17.42■□□□□ 0.38
SNRPA1-211ENST00000560433 CEP164Q9UPV0 1460 aa17.41■□□□□ 0.38
SNRPA1-211ENST00000560433 PDS5BQ9NTI5 1447 aa17.39■□□□□ 0.37
SNRPA1-211ENST00000560433 KIF21AQ7Z4S6 1674 aa17.39■□□□□ 0.37
SNRPA1-211ENST00000560433 RANGAP1P46060 587 aaPredicted RBP17.38■□□□□ 0.37
SNRPA1-211ENST00000560433 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
SNRPA1-211ENST00000560433 RAD54L2Q9Y4B4 1467 aa17.36■□□□□ 0.37
SNRPA1-211ENST00000560433 URB2Q14146 1524 aaKnown RBP17.36■□□□□ 0.37
SNRPA1-211ENST00000560433 CUX2O14529 1486 aa17.35■□□□□ 0.37
SNRPA1-211ENST00000560433 RAPGEF2Q9Y4G8 1499 aa17.34■□□□□ 0.37
SNRPA1-211ENST00000560433 DNMBPQ6XZF7 1577 aa17.34■□□□□ 0.37
SNRPA1-211ENST00000560433 GOLGA3Q08378 1498 aa17.34■□□□□ 0.37
SNRPA1-211ENST00000560433 KIF27Q86VH2 1401 aa17.34■□□□□ 0.37
SNRPA1-211ENST00000560433 POLA1P09884 1462 aaPredicted RBP17.32■□□□□ 0.36
SNRPA1-211ENST00000560433 PPARGC1BQ86YN6 1023 aaKnown RBP17.31■□□□□ 0.36
SNRPA1-211ENST00000560433 TNIKQ9UKE5 1360 aa17.3■□□□□ 0.36
SNRPA1-211ENST00000560433 CEP162Q5TB80 1403 aa17.29■□□□□ 0.36
SNRPA1-211ENST00000560433 PCGF6Q9BYE7 350 aa17.28■□□□□ 0.36
SNRPA1-211ENST00000560433 KIF21BO75037 1637 aa17.28■□□□□ 0.36
SNRPA1-211ENST00000560433 IGF1RP08069 1367 aa17.23■□□□□ 0.35
SNRPA1-211ENST00000560433 PRXQ9BXM0 1461 aa17.22■□□□□ 0.35
SNRPA1-211ENST00000560433 TDRD9Q8NDG6 1382 aaKnown RBP17.21■□□□□ 0.35
SNRPA1-211ENST00000560433 ERCC6Q03468 1493 aa17.19■□□□□ 0.34
SNRPA1-211ENST00000560433 TTBK1Q5TCY1 1321 aaPredicted RBP17.19■□□□□ 0.34
SNRPA1-211ENST00000560433 ABCA10Q8WWZ4 1543 aa17.17■□□□□ 0.34
SNRPA1-211ENST00000560433 MRC2Q9UBG0 1479 aa17.16■□□□□ 0.34
SNRPA1-211ENST00000560433 CARMIL1Q5VZK9 1371 aa17.15■□□□□ 0.34
SNRPA1-211ENST00000560433 CLIP1P30622 1438 aa17.13■□□□□ 0.33
SNRPA1-211ENST00000560433 ERICH3Q5RHP9 1530 aa17.13■□□□□ 0.33
SNRPA1-211ENST00000560433 WDR97A6NE52 1622 aa17.09■□□□□ 0.33
SNRPA1-211ENST00000560433 TRIM26Q12899 539 aaPredicted RBP17.07■□□□□ 0.32
SNRPA1-211ENST00000560433 TARBP1Q13395 1621 aaKnown RBP17.07■□□□□ 0.32
SNRPA1-211ENST00000560433 AQRO60306 1485 aaKnown RBP eCLIP17.07■□□□□ 0.327e-12■□□□□ 9.9
SNRPA1-211ENST00000560433 GAPVD1Q14C86 1478 aa17.06■□□□□ 0.32
SNRPA1-211ENST00000560433 WDR62O43379 1518 aa17.04■□□□□ 0.32
SNRPA1-211ENST00000560433 ABCA5Q8WWZ7 1642 aa17.03■□□□□ 0.32
SNRPA1-211ENST00000560433 ZNF608Q9ULD9 1512 aaPredicted RBP17.03■□□□□ 0.32
SNRPA1-211ENST00000560433 THOC2Q8NI27 1593 aaKnown RBP17■□□□□ 0.31
SNRPA1-211ENST00000560433 P3H3Q8IVL6 736 aa16.98■□□□□ 0.31
SNRPA1-211ENST00000560433 ARAP1Q96P48 1450 aa16.94■□□□□ 0.3
SNRPA1-211ENST00000560433 IFT140Q96RY7 1462 aa16.94■□□□□ 0.3
SNRPA1-211ENST00000560433 CUL7Q14999 1698 aa16.94■□□□□ 0.3
SNRPA1-211ENST00000560433 VPS8Q8N3P4 1428 aa16.94■□□□□ 0.3
SNRPA1-211ENST00000560433 ARHGAP35Q9NRY4 1499 aa16.92■□□□□ 0.3
SNRPA1-211ENST00000560433 PBRM1Q86U86 1689 aa16.92■□□□□ 0.3
SNRPA1-211ENST00000560433 APLP2Q06481 763 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms