RNA–Protein interactions for RNA: ENST00000560307.5

SNRPA1-209, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 433 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-209ENST00000560307 AEBP2Q6ZN18 517 aaPredicted RBP23.28■■□□□ 1.32
SNRPA1-209ENST00000560307 CHIC1Q5VXU3 224 aa21.82■■□□□ 1.08
SNRPA1-209ENST00000560307 SENP3Q9H4L4 574 aaPredicted RBP20.04■□□□□ 0.8
SNRPA1-209ENST00000560307 PHF23Q9BUL5 403 aaPredicted RBP19.65■□□□□ 0.74
SNRPA1-209ENST00000560307 POTEDQ86YR6 584 aa18.83■□□□□ 0.6
SNRPA1-209ENST00000560307 FOXD1Q16676 465 aa18.75■□□□□ 0.59
SNRPA1-209ENST00000560307 MSH5O43196 834 aa17.9■□□□□ 0.46
SNRPA1-209ENST00000560307 PIAS4Q8N2W9 510 aaPredicted RBP17.41■□□□□ 0.38
SNRPA1-209ENST00000560307 PPP6R1Q9UPN7 881 aa16.89■□□□□ 0.29
SNRPA1-209ENST00000560307 ADRA2BP18089 450 aa16.85■□□□□ 0.29
SNRPA1-209ENST00000560307 PLPPR3Q6T4P5 718 aa16.72■□□□□ 0.27
SNRPA1-209ENST00000560307 CACNB1Q02641 598 aaPredicted RBP15.91■□□□□ 0.14
SNRPA1-209ENST00000560307 DMRT2Q9Y5R5 561 aa15.73■□□□□ 0.11
SNRPA1-209ENST00000560307 MAPK8IP2Q13387 824 aaPredicted RBP15.71■□□□□ 0.11
SNRPA1-209ENST00000560307 SCAF1Q9H7N4 1312 aaKnown RBP15.43■□□□□ 0.06
SNRPA1-209ENST00000560307 DCAF8L1A6NGE4 600 aa15.32■□□□□ 0.04
SNRPA1-209ENST00000560307 RNF39Q9H2S5 420 aa15.15■□□□□ 0.02
SNRPA1-209ENST00000560307 C1QBPQ07021 282 aaKnown RBP14.9□□□□□ -0.02
SNRPA1-209ENST00000560307 HOXD11P31277 338 aaPredicted RBP14.8□□□□□ -0.04
SNRPA1-209ENST00000560307 POTEHQ6S545 545 aa14.62□□□□□ -0.07
SNRPA1-209ENST00000560307 PPP4R3CPQ6ZMV5 832 aa14.55□□□□□ -0.08
SNRPA1-209ENST00000560307 RNF216Q9NWF9 866 aaPredicted RBP14.51□□□□□ -0.09
SNRPA1-209ENST00000560307 CNKSR2Q8WXI2 1034 aa14.46□□□□□ -0.09
SNRPA1-209ENST00000560307 DNAJC5BQ9UF47 199 aa14.38□□□□□ -0.11
SNRPA1-209ENST00000560307 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.25□□□□□ -0.13
SNRPA1-209ENST00000560307 CAPN15O75808 1086 aa13.94□□□□□ -0.18
SNRPA1-209ENST00000560307 DSG3P32926 999 aa13.93□□□□□ -0.18
SNRPA1-209ENST00000560307 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
SNRPA1-209ENST00000560307 NCBP3Q53F19 620 aaKnown RBP13.78□□□□□ -0.2
SNRPA1-209ENST00000560307 U3KPZ7 1027 aaPredicted RBP13.77□□□□□ -0.21
SNRPA1-209ENST00000560307 ABCB7O75027 752 aa13.54□□□□□ -0.24
SNRPA1-209ENST00000560307 NPM3O75607 178 aaKnown RBP13.53□□□□□ -0.24
SNRPA1-209ENST00000560307 TRHP20396 242 aaPredicted RBP13.52□□□□□ -0.25
SNRPA1-209ENST00000560307 ZNF219Q9P2Y4 722 aaPredicted RBP13.4□□□□□ -0.26
SNRPA1-209ENST00000560307 CHRDL2Q6WN34 429 aa13.39□□□□□ -0.27
SNRPA1-209ENST00000560307 APLP2Q06481 763 aa13.37□□□□□ -0.27
SNRPA1-209ENST00000560307 RBM42Q9BTD8 480 aaKnown RBP13.37□□□□□ -0.27
SNRPA1-209ENST00000560307 SP7Q8TDD2 431 aaPredicted RBP13.33□□□□□ -0.28
SNRPA1-209ENST00000560307 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.14□□□□□ -0.31
SNRPA1-209ENST00000560307 HNRNPUL2Q1KMD3 747 aaKnown RBP13.14□□□□□ -0.31
SNRPA1-209ENST00000560307 SLC4A2P04920 1241 aa13.1□□□□□ -0.31
SNRPA1-209ENST00000560307 SAMD1Q6SPF0 538 aaPredicted RBP13.02□□□□□ -0.33
SNRPA1-209ENST00000560307 HAX1O00165 279 aa12.95□□□□□ -0.34
SNRPA1-209ENST00000560307 POLA2Q14181 598 aa12.91□□□□□ -0.34
SNRPA1-209ENST00000560307 PIP4P2Q8N4L2 257 aa12.88□□□□□ -0.35
SNRPA1-209ENST00000560307 AKT1S1Q96B36 256 aa12.85□□□□□ -0.35
SNRPA1-209ENST00000560307 REM2Q8IYK8 340 aaPredicted RBP12.74□□□□□ -0.37
SNRPA1-209ENST00000560307 PITPNM1O00562 1244 aa12.64□□□□□ -0.39
SNRPA1-209ENST00000560307 FXR2P51116 673 aaKnown RBP eCLIP12.63□□□□□ -0.39
SNRPA1-209ENST00000560307 EVX2Q03828 476 aa12.62□□□□□ -0.39
SNRPA1-209ENST00000560307 KCNA4P22459 653 aa12.61□□□□□ -0.39
SNRPA1-209ENST00000560307 EHMT2Q96KQ7 1210 aa12.61□□□□□ -0.39
SNRPA1-209ENST00000560307 ZBTB12Q9Y330 459 aaPredicted RBP12.58□□□□□ -0.4
SNRPA1-209ENST00000560307 MYCNP04198 464 aaPredicted RBP12.56□□□□□ -0.4
SNRPA1-209ENST00000560307 OSCARQ8IYS5 282 aa12.56□□□□□ -0.4
SNRPA1-209ENST00000560307 PLSCR2Q9NRY7 297 aa12.51□□□□□ -0.41
SNRPA1-209ENST00000560307 LHX8Q68G74 356 aa12.5□□□□□ -0.41
SNRPA1-209ENST00000560307 PRKAR2AP13861 404 aaKnown RBP12.33□□□□□ -0.44
SNRPA1-209ENST00000560307 GABBR2O75899 941 aa12.31□□□□□ -0.44
SNRPA1-209ENST00000560307 ATF5Q9Y2D1 282 aaPredicted RBP12.31□□□□□ -0.44
SNRPA1-209ENST00000560307 C19orf67A6NJJ6 358 aa12.26□□□□□ -0.45
SNRPA1-209ENST00000560307 CLEC11AQ9Y240 323 aa12.23□□□□□ -0.45
SNRPA1-209ENST00000560307 SLC4A1APQ9BWU0 796 aaKnown RBP12.15□□□□□ -0.46
SNRPA1-209ENST00000560307 SPDYE1Q8NFV5 336 aaPredicted RBP12.12□□□□□ -0.47
SNRPA1-209ENST00000560307 SPDYE2BA6NHP3 402 aa12.1□□□□□ -0.47
SNRPA1-209ENST00000560307 SPDYE6P0CI01 402 aa12.1□□□□□ -0.47
SNRPA1-209ENST00000560307 SPDYE2Q495Y8 402 aa12.1□□□□□ -0.47
SNRPA1-209ENST00000560307 CHADLQ6NUI6 762 aa12.03□□□□□ -0.48
SNRPA1-209ENST00000560307 CSRNP3Q8WYN3 585 aa12.03□□□□□ -0.48
SNRPA1-209ENST00000560307 POTEIP0CG38 1075 aa12□□□□□ -0.49
SNRPA1-209ENST00000560307 FOXD4L1Q9NU39 408 aa12□□□□□ -0.49
SNRPA1-209ENST00000560307 FBLN2P98095 1184 aa11.97□□□□□ -0.49
SNRPA1-209ENST00000560307 CD44P16070 742 aaKnown RBP11.9□□□□□ -0.5
SNRPA1-209ENST00000560307 DCBLD2Q96PD2 775 aa11.9□□□□□ -0.5
SNRPA1-209ENST00000560307 ZNF692Q9BU19 519 aaPredicted RBP11.88□□□□□ -0.51
SNRPA1-209ENST00000560307 PRR29P0C7W0 189 aa11.86□□□□□ -0.51
SNRPA1-209ENST00000560307 POTEMA6NI47 508 aa11.84□□□□□ -0.51
SNRPA1-209ENST00000560307 SSUH2Q9Y2M2 353 aa11.81□□□□□ -0.52
SNRPA1-209ENST00000560307 CLCN6P51797 869 aa11.79□□□□□ -0.52
SNRPA1-209ENST00000560307 POTEGQ6S5H5 508 aa11.78□□□□□ -0.52
SNRPA1-209ENST00000560307 OTUD5Q96G74 571 aa11.74□□□□□ -0.53
SNRPA1-209ENST00000560307 FARP1Q9Y4F1 1045 aaPredicted RBP11.73□□□□□ -0.53
SNRPA1-209ENST00000560307 MKRN4PQ13434 485 aaPredicted RBP11.68□□□□□ -0.54
SNRPA1-209ENST00000560307 PABPN1Q86U42 306 aaKnown RBP eCLIP11.67□□□□□ -0.54
SNRPA1-209ENST00000560307 ATXN8OSP0DMR3 200 aa11.64□□□□□ -0.55
SNRPA1-209ENST00000560307 PCDH10Q9P2E7 1040 aa11.62□□□□□ -0.55
SNRPA1-209ENST00000560307 ZRANB1Q9UGI0 708 aa11.62□□□□□ -0.55
SNRPA1-209ENST00000560307 ZNF579Q8NAF0 562 aaKnown RBP11.61□□□□□ -0.55
SNRPA1-209ENST00000560307 POTEB2H3BUK9 544 aa11.6□□□□□ -0.55
SNRPA1-209ENST00000560307 ZBTB22O15209 634 aa11.58□□□□□ -0.56
SNRPA1-209ENST00000560307 GALR2O43603 387 aaPredicted RBP11.56□□□□□ -0.56
SNRPA1-209ENST00000560307 FAM163AQ96GL9 167 aaPredicted RBP11.4□□□□□ -0.58
SNRPA1-209ENST00000560307 PAK3O75914 559 aaPredicted RBP11.38□□□□□ -0.59
SNRPA1-209ENST00000560307 PHF12Q96QT6 1004 aa11.38□□□□□ -0.59
SNRPA1-209ENST00000560307 PELP1Q8IZL8 1130 aaKnown RBP11.37□□□□□ -0.59
SNRPA1-209ENST00000560307 METRNQ9UJH8 293 aa11.36□□□□□ -0.59
SNRPA1-209ENST00000560307 MAMSTRQ6ZN01 415 aa11.34□□□□□ -0.59
SNRPA1-209ENST00000560307 LCE2DQ5TA82 110 aaPredicted RBP11.32□□□□□ -0.6
SNRPA1-209ENST00000560307 CREBZFQ9NS37 354 aa11.3□□□□□ -0.6
SNRPA1-209ENST00000560307 POTEJP0CG39 1038 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms