RNA–Protein interactions for RNA: ENST00000558036.5

SNRPA1-205, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 2,108 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-205ENST00000558036 NISCHQ9Y2I1 1504 aa46.42■■■■■ 5.02
SNRPA1-205ENST00000558036 CCDC180Q9P1Z9 1646 aa40.39■■■■■ 4.06
SNRPA1-205ENST00000558036 ZCCHC6Q5VYS8 1495 aaKnown RBP38.97■■■■□ 3.83
SNRPA1-205ENST00000558036 DCAF8L2P0C7V8 631 aa38.63■■■■□ 3.77
SNRPA1-205ENST00000558036 ABCC9O60706 1549 aa38.55■■■■□ 3.76
SNRPA1-205ENST00000558036 DCAF1Q9Y4B6 1507 aa38.26■■■■□ 3.71
SNRPA1-205ENST00000558036 SHROOM4Q9ULL8 1493 aa38.05■■■■□ 3.68
SNRPA1-205ENST00000558036 MYO15BQ96JP2 1530 aa37.81■■■■□ 3.64
SNRPA1-205ENST00000558036 NACADO15069 1562 aa37.69■■■■□ 3.62
SNRPA1-205ENST00000558036 RB1CC1Q8TDY2 1594 aa37.42■■■■□ 3.58
SNRPA1-205ENST00000558036 SCRIBQ14160 1630 aa37.34■■■■□ 3.57
SNRPA1-205ENST00000558036 UNC13AQ9UPW8 1703 aa36.68■■■■□ 3.46
SNRPA1-205ENST00000558036 SUPT5HO00267 1087 aaKnown RBP36.54■■■■□ 3.44
SNRPA1-205ENST00000558036 PABPN1Q86U42 306 aaKnown RBP eCLIP36.42■■■■□ 3.42
SNRPA1-205ENST00000558036 BICRAQ9NZM4 1560 aa36.36■■■■□ 3.41
SNRPA1-205ENST00000558036 CECR2Q9BXF3 1484 aa36.2■■■■□ 3.38
SNRPA1-205ENST00000558036 RSF1Q96T23 1441 aaPredicted RBP36.03■■■■□ 3.36
SNRPA1-205ENST00000558036 MROH2BQ7Z745 1585 aa35.93■■■■□ 3.34
SNRPA1-205ENST00000558036 BAZ1AQ9NRL2 1556 aaPredicted RBP35.82■■■■□ 3.32
SNRPA1-205ENST00000558036 SMARCA4P51532 1647 aa35.7■■■■□ 3.31
SNRPA1-205ENST00000558036 WIZO95785 1651 aa35.62■■■■□ 3.29
SNRPA1-205ENST00000558036 EIF4G1Q04637 1599 aaKnown RBP35.28■■■■□ 3.24
SNRPA1-205ENST00000558036 PEG3Q9GZU2 1588 aa35.19■■■■□ 3.22
SNRPA1-205ENST00000558036 TOP2AP11388 1531 aaKnown RBP35.17■■■■□ 3.22
SNRPA1-205ENST00000558036 ATAD2BQ9ULI0 1458 aa35.17■■■■□ 3.22
SNRPA1-205ENST00000558036 SMARCA2P51531 1590 aa35.07■■■■□ 3.21
SNRPA1-205ENST00000558036 BAZ1BQ9UIG0 1483 aaKnown RBP34.97■■■■□ 3.19
SNRPA1-205ENST00000558036 CCDC88BA6NC98 1476 aa34.89■■■■□ 3.18
SNRPA1-205ENST00000558036 NCAPD3P42695 1498 aa34.84■■■■□ 3.17
SNRPA1-205ENST00000558036 CHIC1Q5VXU3 224 aa34.82■■■■□ 3.17
SNRPA1-205ENST00000558036 CC2D2AQ9P2K1 1620 aa34.79■■■■□ 3.16
SNRPA1-205ENST00000558036 HMGXB3Q12766 1538 aa34.74■■■■□ 3.15
SNRPA1-205ENST00000558036 TRIM41Q8WV44 630 aa34.27■■■■□ 3.08
SNRPA1-205ENST00000558036 ABCC8Q09428 1581 aa34.19■■■■□ 3.06
SNRPA1-205ENST00000558036 DNAJC5BQ9UF47 199 aa34.19■■■■□ 3.06
SNRPA1-205ENST00000558036 CFTRP13569 1480 aa34.06■■■■□ 3.04
SNRPA1-205ENST00000558036 CADPSQ9ULU8 1353 aa33.99■■■■□ 3.03
SNRPA1-205ENST00000558036 WRNQ14191 1432 aaPredicted RBP eCLIP33.91■■■■□ 3.02
SNRPA1-205ENST00000558036 NESP48681 1621 aa33.82■■■■□ 3.01
SNRPA1-205ENST00000558036 SYNJ1O43426 1573 aa33.79■■■■□ 3
SNRPA1-205ENST00000558036 FAM9AQ8IZU1 332 aaPredicted RBP33.77■■■■□ 3
SNRPA1-205ENST00000558036 PRDM2Q13029 1718 aa33.73■■■□□ 2.99
SNRPA1-205ENST00000558036 LAMC3Q9Y6N6 1575 aa33.64■■■□□ 2.98
SNRPA1-205ENST00000558036 FANCD2Q9BXW9 1451 aa33.63■■■□□ 2.97
SNRPA1-205ENST00000558036 LOC105371045A0A1W2PR82 267 aa33.61■■■□□ 2.97
SNRPA1-205ENST00000558036 CUX1P39880 1505 aa33.58■■■□□ 2.97
SNRPA1-205ENST00000558036 TOP2BQ02880 1626 aa33.58■■■□□ 2.97
SNRPA1-205ENST00000558036 SOGA1O94964 1423 aa33.54■■■□□ 2.96
SNRPA1-205ENST00000558036 BIVM-ERCC5R4GMW8 1640 aa33.51■■■□□ 2.95
SNRPA1-205ENST00000558036 RUSC2Q8N2Y8 1516 aa33.43■■■□□ 2.94
SNRPA1-205ENST00000558036 PDS5BQ9NTI5 1447 aa33.43■■■□□ 2.94
SNRPA1-205ENST00000558036 EHMT2Q96KQ7 1210 aa33.41■■■□□ 2.94
SNRPA1-205ENST00000558036 CEP164Q9UPV0 1460 aa33.4■■■□□ 2.94
SNRPA1-205ENST00000558036 KIF21AQ7Z4S6 1674 aa33.31■■■□□ 2.92
SNRPA1-205ENST00000558036 DNMBPQ6XZF7 1577 aa33.24■■■□□ 2.91
SNRPA1-205ENST00000558036 EEA1Q15075 1411 aa33.24■■■□□ 2.91
SNRPA1-205ENST00000558036 FGD5Q6ZNL6 1462 aa33.24■■■□□ 2.91
SNRPA1-205ENST00000558036 TOPBP1Q92547 1522 aa33.24■■■□□ 2.91
SNRPA1-205ENST00000558036 URB2Q14146 1524 aaKnown RBP33.23■■■□□ 2.91
SNRPA1-205ENST00000558036 CSRNP3Q8WYN3 585 aa33.22■■■□□ 2.91
SNRPA1-205ENST00000558036 POLA1P09884 1462 aaPredicted RBP33.09■■■□□ 2.89
SNRPA1-205ENST00000558036 RAD54L2Q9Y4B4 1467 aa33.05■■■□□ 2.88
SNRPA1-205ENST00000558036 KIF27Q86VH2 1401 aa33.03■■■□□ 2.88
SNRPA1-205ENST00000558036 CUX2O14529 1486 aa33.02■■■□□ 2.88
SNRPA1-205ENST00000558036 ERCC6Q03468 1493 aa33.02■■■□□ 2.88
SNRPA1-205ENST00000558036 MRC2Q9UBG0 1479 aa33.01■■■□□ 2.88
SNRPA1-205ENST00000558036 ABCA10Q8WWZ4 1543 aa32.88■■■□□ 2.85
SNRPA1-205ENST00000558036 GOLGA3Q08378 1498 aa32.87■■■□□ 2.85
SNRPA1-205ENST00000558036 UBTFP17480 764 aaKnown RBP32.85■■■□□ 2.85
SNRPA1-205ENST00000558036 KIF21BO75037 1637 aa32.85■■■□□ 2.85
SNRPA1-205ENST00000558036 RAPGEF2Q9Y4G8 1499 aa32.83■■■□□ 2.85
SNRPA1-205ENST00000558036 WDR62O43379 1518 aa32.82■■■□□ 2.84
SNRPA1-205ENST00000558036 IGF1RP08069 1367 aa32.79■■■□□ 2.84
SNRPA1-205ENST00000558036 PRXQ9BXM0 1461 aa32.78■■■□□ 2.84
SNRPA1-205ENST00000558036 THOC2Q8NI27 1593 aaKnown RBP32.76■■■□□ 2.84
SNRPA1-205ENST00000558036 TDRD9Q8NDG6 1382 aaKnown RBP32.76■■■□□ 2.83
SNRPA1-205ENST00000558036 WDR97A6NE52 1622 aa32.74■■■□□ 2.83
SNRPA1-205ENST00000558036 TNIKQ9UKE5 1360 aa32.74■■■□□ 2.83
SNRPA1-205ENST00000558036 TARBP1Q13395 1621 aaKnown RBP32.72■■■□□ 2.83
SNRPA1-205ENST00000558036 ERICH3Q5RHP9 1530 aa32.64■■■□□ 2.82
SNRPA1-205ENST00000558036 CEP162Q5TB80 1403 aa32.63■■■□□ 2.81
SNRPA1-205ENST00000558036 CARMIL1Q5VZK9 1371 aa32.62■■■□□ 2.81
SNRPA1-205ENST00000558036 ABCA5Q8WWZ7 1642 aa32.61■■■□□ 2.81
SNRPA1-205ENST00000558036 GAPVD1Q14C86 1478 aa32.61■■■□□ 2.81
SNRPA1-205ENST00000558036 IFT140Q96RY7 1462 aa32.58■■■□□ 2.81
SNRPA1-205ENST00000558036 AQRO60306 1485 aaKnown RBP eCLIP32.56■■■□□ 2.88e-7■■□□□ 14.1
SNRPA1-205ENST00000558036 ZNF608Q9ULD9 1512 aaPredicted RBP32.53■■■□□ 2.8
SNRPA1-205ENST00000558036 RANGAP1P46060 587 aaPredicted RBP32.51■■■□□ 2.79
SNRPA1-205ENST00000558036 CUL7Q14999 1698 aa32.42■■■□□ 2.78
SNRPA1-205ENST00000558036 CLIP1P30622 1438 aa32.39■■■□□ 2.78
SNRPA1-205ENST00000558036 PBRM1Q86U86 1689 aa32.36■■■□□ 2.77
SNRPA1-205ENST00000558036 GRIN2BQ13224 1484 aa32.34■■■□□ 2.77
SNRPA1-205ENST00000558036 EIF4G3O43432 1585 aaKnown RBP32.33■■■□□ 2.77
SNRPA1-205ENST00000558036 FHAD1B1AJZ9 1412 aa32.22■■■□□ 2.75
SNRPA1-205ENST00000558036 ADAMTS12P58397 1594 aa32.21■■■□□ 2.75
SNRPA1-205ENST00000558036 SNAPC4Q5SXM2 1469 aa32.2■■■□□ 2.74
SNRPA1-205ENST00000558036 PPARGC1BQ86YN6 1023 aaKnown RBP32.13■■■□□ 2.73
SNRPA1-205ENST00000558036 ARHGAP35Q9NRY4 1499 aa32.09■■■□□ 2.73
SNRPA1-205ENST00000558036 ARAP1Q96P48 1450 aa32.08■■■□□ 2.73
SNRPA1-205ENST00000558036 CTTNBP2Q8WZ74 1663 aa32.06■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms