RNA–Protein interactions for RNA: ENST00000560496.5

SNRPA1-212, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 5

Gene SNRPA1, Length 824 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-212ENST00000560496 NISCHQ9Y2I1 1504 aa25.76■■□□□ 1.71
SNRPA1-212ENST00000560496 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
SNRPA1-212ENST00000560496 ABCC9O60706 1549 aa22.94■■□□□ 1.26
SNRPA1-212ENST00000560496 RB1CC1Q8TDY2 1594 aa21.95■■□□□ 1.1
SNRPA1-212ENST00000560496 NACADO15069 1562 aa21.81■■□□□ 1.08
SNRPA1-212ENST00000560496 UNC13AQ9UPW8 1703 aa21.63■■□□□ 1.05
SNRPA1-212ENST00000560496 MYO15BQ96JP2 1530 aa21.57■■□□□ 1.04
SNRPA1-212ENST00000560496 ZCCHC6Q5VYS8 1495 aaKnown RBP21.44■■□□□ 1.02
SNRPA1-212ENST00000560496 BICRAQ9NZM4 1560 aa21.38■■□□□ 1.01
SNRPA1-212ENST00000560496 DCAF8L2P0C7V8 631 aa21.37■■□□□ 1.01
SNRPA1-212ENST00000560496 DNAJC5BQ9UF47 199 aa21.35■■□□□ 1.01
SNRPA1-212ENST00000560496 DCAF1Q9Y4B6 1507 aa21.34■■□□□ 1.01
SNRPA1-212ENST00000560496 AEBP2Q6ZN18 517 aaPredicted RBP21.28■■□□□ 1
SNRPA1-212ENST00000560496 PABPN1Q86U42 306 aaKnown RBP eCLIP21.24■□□□□ 0.99
SNRPA1-212ENST00000560496 SCRIBQ14160 1630 aa21.09■□□□□ 0.97
SNRPA1-212ENST00000560496 SHROOM4Q9ULL8 1493 aa21.08■□□□□ 0.97
SNRPA1-212ENST00000560496 CC2D2AQ9P2K1 1620 aa20.82■□□□□ 0.92
SNRPA1-212ENST00000560496 EIF4G1Q04637 1599 aaKnown RBP20.8■□□□□ 0.92
SNRPA1-212ENST00000560496 CECR2Q9BXF3 1484 aa20.66■□□□□ 0.9
SNRPA1-212ENST00000560496 SMARCA4P51532 1647 aa20.15■□□□□ 0.82
SNRPA1-212ENST00000560496 NCAPD3P42695 1498 aa20.08■□□□□ 0.81
SNRPA1-212ENST00000560496 HMGXB3Q12766 1538 aa20.06■□□□□ 0.8
SNRPA1-212ENST00000560496 ATAD2BQ9ULI0 1458 aa20.05■□□□□ 0.8
SNRPA1-212ENST00000560496 SMARCA2P51531 1590 aa20.03■□□□□ 0.8
SNRPA1-212ENST00000560496 BAZ1AQ9NRL2 1556 aaPredicted RBP20■□□□□ 0.79
SNRPA1-212ENST00000560496 PEG3Q9GZU2 1588 aa19.97■□□□□ 0.79
SNRPA1-212ENST00000560496 CHIC1Q5VXU3 224 aa19.89■□□□□ 0.77
SNRPA1-212ENST00000560496 MROH2BQ7Z745 1585 aa19.87■□□□□ 0.77
SNRPA1-212ENST00000560496 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
SNRPA1-212ENST00000560496 CUX2O14529 1486 aa19.79■□□□□ 0.76
SNRPA1-212ENST00000560496 ERCC6Q03468 1493 aa19.78■□□□□ 0.76
SNRPA1-212ENST00000560496 NESP48681 1621 aa19.77■□□□□ 0.76
SNRPA1-212ENST00000560496 THOC2Q8NI27 1593 aaKnown RBP19.7■□□□□ 0.74
SNRPA1-212ENST00000560496 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
SNRPA1-212ENST00000560496 WIZO95785 1651 aa19.67■□□□□ 0.74
SNRPA1-212ENST00000560496 KIF21AQ7Z4S6 1674 aa19.65■□□□□ 0.74
SNRPA1-212ENST00000560496 DNAJC5Q9H3Z4 198 aa19.5■□□□□ 0.71
SNRPA1-212ENST00000560496 PDS5BQ9NTI5 1447 aa19.44■□□□□ 0.7
SNRPA1-212ENST00000560496 TOP2AP11388 1531 aaKnown RBP19.42■□□□□ 0.7
SNRPA1-212ENST00000560496 CADPSQ9ULU8 1353 aa19.42■□□□□ 0.7
SNRPA1-212ENST00000560496 RSF1Q96T23 1441 aaPredicted RBP19.42■□□□□ 0.7
SNRPA1-212ENST00000560496 WDR62O43379 1518 aa19.38■□□□□ 0.69
SNRPA1-212ENST00000560496 MRC2Q9UBG0 1479 aa19.35■□□□□ 0.69
SNRPA1-212ENST00000560496 PRDM2Q13029 1718 aa19.33■□□□□ 0.68
SNRPA1-212ENST00000560496 CEP164Q9UPV0 1460 aa19.3■□□□□ 0.68
SNRPA1-212ENST00000560496 CFTRP13569 1480 aa19.29■□□□□ 0.68
SNRPA1-212ENST00000560496 FANCD2Q9BXW9 1451 aa19.27■□□□□ 0.67
SNRPA1-212ENST00000560496 URB2Q14146 1524 aaKnown RBP19.15■□□□□ 0.66
SNRPA1-212ENST00000560496 CCDC88BA6NC98 1476 aa19.11■□□□□ 0.65
SNRPA1-212ENST00000560496 TOPBP1Q92547 1522 aa18.94■□□□□ 0.62
SNRPA1-212ENST00000560496 DNMBPQ6XZF7 1577 aa18.92■□□□□ 0.62
SNRPA1-212ENST00000560496 IFT140Q96RY7 1462 aa18.89■□□□□ 0.61
SNRPA1-212ENST00000560496 EIF4G3O43432 1585 aaKnown RBP18.89■□□□□ 0.61
SNRPA1-212ENST00000560496 ZNF608Q9ULD9 1512 aaPredicted RBP18.87■□□□□ 0.61
SNRPA1-212ENST00000560496 TARBP1Q13395 1621 aaKnown RBP18.84■□□□□ 0.61
SNRPA1-212ENST00000560496 ABCC8Q09428 1581 aa18.84■□□□□ 0.61
SNRPA1-212ENST00000560496 POLA1P09884 1462 aaPredicted RBP18.76■□□□□ 0.59
SNRPA1-212ENST00000560496 CHD1O14646 1710 aa18.74■□□□□ 0.59
SNRPA1-212ENST00000560496 RIMBP3CA6NJZ7 1639 aa18.71■□□□□ 0.58
SNRPA1-212ENST00000560496 RIMBP3BA6NNM3 1639 aa18.71■□□□□ 0.58
SNRPA1-212ENST00000560496 RIMBP3Q9UFD9 1639 aa18.71■□□□□ 0.58
SNRPA1-212ENST00000560496 WDR97A6NE52 1622 aa18.69■□□□□ 0.58
SNRPA1-212ENST00000560496 OSCARQ8IYS5 282 aa18.68■□□□□ 0.58
SNRPA1-212ENST00000560496 CUX1P39880 1505 aa18.68■□□□□ 0.58
SNRPA1-212ENST00000560496 FGD5Q6ZNL6 1462 aa18.65■□□□□ 0.58
SNRPA1-212ENST00000560496 TRIM41Q8WV44 630 aa18.64■□□□□ 0.57
SNRPA1-212ENST00000560496 AQRO60306 1485 aaKnown RBP eCLIP18.64■□□□□ 0.577e-12■□□□□ 9.9
SNRPA1-212ENST00000560496 RAD54L2Q9Y4B4 1467 aa18.64■□□□□ 0.57
SNRPA1-212ENST00000560496 ARHGEF11O15085 1522 aa18.61■□□□□ 0.57
SNRPA1-212ENST00000560496 PBRM1Q86U86 1689 aa18.57■□□□□ 0.56
SNRPA1-212ENST00000560496 SOGA1O94964 1423 aa18.56■□□□□ 0.56
SNRPA1-212ENST00000560496 SNAPC4Q5SXM2 1469 aa18.53■□□□□ 0.56
SNRPA1-212ENST00000560496 ABCA5Q8WWZ7 1642 aa18.52■□□□□ 0.55
SNRPA1-212ENST00000560496 TDRD9Q8NDG6 1382 aaKnown RBP18.5■□□□□ 0.55
SNRPA1-212ENST00000560496 CLASP1Q7Z460 1538 aa18.49■□□□□ 0.55
SNRPA1-212ENST00000560496 BIVM-ERCC5R4GMW8 1640 aa18.49■□□□□ 0.55
SNRPA1-212ENST00000560496 MAGI1Q96QZ7 1491 aaPredicted RBP18.48■□□□□ 0.55
SNRPA1-212ENST00000560496 GRIN2BQ13224 1484 aa18.46■□□□□ 0.54
SNRPA1-212ENST00000560496 ABCA10Q8WWZ4 1543 aa18.44■□□□□ 0.54
SNRPA1-212ENST00000560496 ARAP1Q96P48 1450 aa18.44■□□□□ 0.54
SNRPA1-212ENST00000560496 SUPT5HO00267 1087 aaKnown RBP18.43■□□□□ 0.54
SNRPA1-212ENST00000560496 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
SNRPA1-212ENST00000560496 TOP2BQ02880 1626 aa18.42■□□□□ 0.54
SNRPA1-212ENST00000560496 SYNJ2O15056 1496 aa18.4■□□□□ 0.54
SNRPA1-212ENST00000560496 GAPVD1Q14C86 1478 aa18.39■□□□□ 0.53
SNRPA1-212ENST00000560496 ADAMTS12P58397 1594 aa18.35■□□□□ 0.53
SNRPA1-212ENST00000560496 FBLN2P98095 1184 aa18.34■□□□□ 0.53
SNRPA1-212ENST00000560496 WRNQ14191 1432 aaPredicted RBP eCLIP18.31■□□□□ 0.52
SNRPA1-212ENST00000560496 SENP3Q9H4L4 574 aaPredicted RBP18.26■□□□□ 0.51
SNRPA1-212ENST00000560496 GRIN2AQ12879 1464 aa18.26■□□□□ 0.51
SNRPA1-212ENST00000560496 CEP170Q5SW79 1584 aa18.25■□□□□ 0.51
SNRPA1-212ENST00000560496 CHMP7Q8WUX9 453 aaPredicted RBP18.25■□□□□ 0.51
SNRPA1-212ENST00000560496 CYB5RLQ6IPT4 315 aa18.23■□□□□ 0.51
SNRPA1-212ENST00000560496 ERICH3Q5RHP9 1530 aa18.23■□□□□ 0.51
SNRPA1-212ENST00000560496 SHROOM2Q13796 1616 aa18.2■□□□□ 0.5
SNRPA1-212ENST00000560496 NUP160Q12769 1436 aa18.19■□□□□ 0.5
SNRPA1-212ENST00000560496 ERCC6L2Q5T890 1561 aa18.19■□□□□ 0.5
SNRPA1-212ENST00000560496 FHAD1B1AJZ9 1412 aa18.15■□□□□ 0.5
SNRPA1-212ENST00000560496 RUSC2Q8N2Y8 1516 aa18.12■□□□□ 0.49
SNRPA1-212ENST00000560496 CUL7Q14999 1698 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms