RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 NISCHQ9Y2I1 1504 aa27.45■■□□□ 1.98
HDAC6-230ENST00000488543 CCDC180Q9P1Z9 1646 aa23.87■■□□□ 1.41
HDAC6-230ENST00000488543 ZCCHC6Q5VYS8 1495 aaKnown RBP23■■□□□ 1.27
HDAC6-230ENST00000488543 DCAF8L2P0C7V8 631 aa22.99■■□□□ 1.27
HDAC6-230ENST00000488543 ABCC9O60706 1549 aa22.98■■□□□ 1.27
HDAC6-230ENST00000488543 DCAF1Q9Y4B6 1507 aa22.58■■□□□ 1.21
HDAC6-230ENST00000488543 SHROOM4Q9ULL8 1493 aa22.49■■□□□ 1.19
HDAC6-230ENST00000488543 MYO15BQ96JP2 1530 aa22.36■■□□□ 1.17
HDAC6-230ENST00000488543 NACADO15069 1562 aa22.33■■□□□ 1.17
HDAC6-230ENST00000488543 RB1CC1Q8TDY2 1594 aa22.2■■□□□ 1.14
HDAC6-230ENST00000488543 SCRIBQ14160 1630 aa22.11■■□□□ 1.13
HDAC6-230ENST00000488543 UNC13AQ9UPW8 1703 aa21.78■■□□□ 1.08
HDAC6-230ENST00000488543 PABPN1Q86U42 306 aaKnown RBP eCLIP21.73■■□□□ 1.078e-7■■■□□ 15.9
HDAC6-230ENST00000488543 BICRAQ9NZM4 1560 aa21.6■■□□□ 1.05
HDAC6-230ENST00000488543 SUPT5HO00267 1087 aaKnown RBP21.56■■□□□ 1.04
HDAC6-230ENST00000488543 CECR2Q9BXF3 1484 aa21.45■■□□□ 1.03
HDAC6-230ENST00000488543 RSF1Q96T23 1441 aaPredicted RBP21.29■■□□□ 1
HDAC6-230ENST00000488543 MROH2BQ7Z745 1585 aa21.26■□□□□ 0.99
HDAC6-230ENST00000488543 BAZ1AQ9NRL2 1556 aaPredicted RBP21.17■□□□□ 0.98
HDAC6-230ENST00000488543 SMARCA4P51532 1647 aa21.11■□□□□ 0.97
HDAC6-230ENST00000488543 WIZO95785 1651 aa21.07■□□□□ 0.96
HDAC6-230ENST00000488543 EIF4G1Q04637 1599 aaKnown RBP20.96■□□□□ 0.95
HDAC6-230ENST00000488543 ATAD2BQ9ULI0 1458 aa20.86■□□□□ 0.93
HDAC6-230ENST00000488543 PEG3Q9GZU2 1588 aa20.81■□□□□ 0.92
HDAC6-230ENST00000488543 SMARCA2P51531 1590 aa20.76■□□□□ 0.91
HDAC6-230ENST00000488543 TOP2AP11388 1531 aaKnown RBP20.76■□□□□ 0.91
HDAC6-230ENST00000488543 BAZ1BQ9UIG0 1483 aaKnown RBP20.72■□□□□ 0.91
HDAC6-230ENST00000488543 CC2D2AQ9P2K1 1620 aa20.71■□□□□ 0.91
HDAC6-230ENST00000488543 CHIC1Q5VXU3 224 aa20.7■□□□□ 0.9
HDAC6-230ENST00000488543 NCAPD3P42695 1498 aa20.68■□□□□ 0.9
HDAC6-230ENST00000488543 CCDC88BA6NC98 1476 aa20.64■□□□□ 0.89
HDAC6-230ENST00000488543 HMGXB3Q12766 1538 aa20.56■□□□□ 0.88
HDAC6-230ENST00000488543 DNAJC5BQ9UF47 199 aa20.55■□□□□ 0.88
HDAC6-230ENST00000488543 TRIM41Q8WV44 630 aa20.2■□□□□ 0.82
HDAC6-230ENST00000488543 ABCC8Q09428 1581 aa20.18■□□□□ 0.82
HDAC6-230ENST00000488543 CFTRP13569 1480 aa20.18■□□□□ 0.82
HDAC6-230ENST00000488543 CADPSQ9ULU8 1353 aa20.18■□□□□ 0.82
HDAC6-230ENST00000488543 NESP48681 1621 aa20.14■□□□□ 0.81
HDAC6-230ENST00000488543 WRNQ14191 1432 aaPredicted RBP eCLIP20.02■□□□□ 0.8
HDAC6-230ENST00000488543 LAMC3Q9Y6N6 1575 aa19.95■□□□□ 0.78
HDAC6-230ENST00000488543 FANCD2Q9BXW9 1451 aa19.95■□□□□ 0.78
HDAC6-230ENST00000488543 SYNJ1O43426 1573 aa19.94■□□□□ 0.78
HDAC6-230ENST00000488543 FAM9AQ8IZU1 332 aaPredicted RBP19.94■□□□□ 0.78
HDAC6-230ENST00000488543 PRDM2Q13029 1718 aa19.92■□□□□ 0.78
HDAC6-230ENST00000488543 LOC105371045A0A1W2PR82 267 aa19.92■□□□□ 0.78
HDAC6-230ENST00000488543 CUX1P39880 1505 aa19.87■□□□□ 0.77
HDAC6-230ENST00000488543 PDS5BQ9NTI5 1447 aa19.86■□□□□ 0.77
HDAC6-230ENST00000488543 TOP2BQ02880 1626 aa19.81■□□□□ 0.76
HDAC6-230ENST00000488543 CEP164Q9UPV0 1460 aa19.81■□□□□ 0.76
HDAC6-230ENST00000488543 SOGA1O94964 1423 aa19.8■□□□□ 0.76
HDAC6-230ENST00000488543 BIVM-ERCC5R4GMW8 1640 aa19.79■□□□□ 0.76
HDAC6-230ENST00000488543 KIF21AQ7Z4S6 1674 aa19.78■□□□□ 0.76
HDAC6-230ENST00000488543 EHMT2Q96KQ7 1210 aa19.76■□□□□ 0.75
HDAC6-230ENST00000488543 RUSC2Q8N2Y8 1516 aa19.76■□□□□ 0.75
HDAC6-230ENST00000488543 URB2Q14146 1524 aaKnown RBP19.72■□□□□ 0.75
HDAC6-230ENST00000488543 TOPBP1Q92547 1522 aa19.7■□□□□ 0.74
HDAC6-230ENST00000488543 EEA1Q15075 1411 aa19.69■□□□□ 0.74
HDAC6-230ENST00000488543 FGD5Q6ZNL6 1462 aa19.68■□□□□ 0.74
HDAC6-230ENST00000488543 DNMBPQ6XZF7 1577 aa19.67■□□□□ 0.74
HDAC6-230ENST00000488543 ERCC6Q03468 1493 aa19.66■□□□□ 0.74
HDAC6-230ENST00000488543 CSRNP3Q8WYN3 585 aa19.61■□□□□ 0.73
HDAC6-230ENST00000488543 RAD54L2Q9Y4B4 1467 aa19.61■□□□□ 0.73
HDAC6-230ENST00000488543 POLA1P09884 1462 aaPredicted RBP19.61■□□□□ 0.73
HDAC6-230ENST00000488543 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
HDAC6-230ENST00000488543 CUX2O14529 1486 aa19.54■□□□□ 0.72
HDAC6-230ENST00000488543 KIF27Q86VH2 1401 aa19.51■□□□□ 0.71
HDAC6-230ENST00000488543 KIF21BO75037 1637 aa19.49■□□□□ 0.71
HDAC6-230ENST00000488543 WDR62O43379 1518 aa19.48■□□□□ 0.71
HDAC6-230ENST00000488543 THOC2Q8NI27 1593 aaKnown RBP19.47■□□□□ 0.71
HDAC6-230ENST00000488543 TDRD9Q8NDG6 1382 aaKnown RBP19.47■□□□□ 0.71
HDAC6-230ENST00000488543 PCGF6Q9BYE7 350 aa19.46■□□□□ 0.71
HDAC6-230ENST00000488543 ABCA10Q8WWZ4 1543 aa19.45■□□□□ 0.7
HDAC6-230ENST00000488543 GOLGA3Q08378 1498 aa19.45■□□□□ 0.7
HDAC6-230ENST00000488543 IGF1RP08069 1367 aa19.42■□□□□ 0.7
HDAC6-230ENST00000488543 TNIKQ9UKE5 1360 aa19.41■□□□□ 0.7
HDAC6-230ENST00000488543 UBTFP17480 764 aaKnown RBP19.4■□□□□ 0.7
HDAC6-230ENST00000488543 TARBP1Q13395 1621 aaKnown RBP19.39■□□□□ 0.7
HDAC6-230ENST00000488543 HRCP23327 699 aa19.39■□□□□ 0.69
HDAC6-230ENST00000488543 RAPGEF2Q9Y4G8 1499 aa19.37■□□□□ 0.69
HDAC6-230ENST00000488543 AQRO60306 1485 aaKnown RBP eCLIP19.36■□□□□ 0.69
HDAC6-230ENST00000488543 ZNF608Q9ULD9 1512 aaPredicted RBP19.34■□□□□ 0.69
HDAC6-230ENST00000488543 WDR97A6NE52 1622 aa19.34■□□□□ 0.69
HDAC6-230ENST00000488543 PRXQ9BXM0 1461 aa19.34■□□□□ 0.69
HDAC6-230ENST00000488543 CEP162Q5TB80 1403 aa19.33■□□□□ 0.69
HDAC6-230ENST00000488543 IFT140Q96RY7 1462 aa19.33■□□□□ 0.68
HDAC6-230ENST00000488543 GAPVD1Q14C86 1478 aa19.32■□□□□ 0.68
HDAC6-230ENST00000488543 ERICH3Q5RHP9 1530 aa19.32■□□□□ 0.68
HDAC6-230ENST00000488543 CARMIL1Q5VZK9 1371 aa19.3■□□□□ 0.68
HDAC6-230ENST00000488543 ABCA5Q8WWZ7 1642 aa19.28■□□□□ 0.68
HDAC6-230ENST00000488543 RANGAP1P46060 587 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-230ENST00000488543 PPARGC1BQ86YN6 1023 aaKnown RBP19.24■□□□□ 0.67
HDAC6-230ENST00000488543 EIF4G3O43432 1585 aaKnown RBP19.17■□□□□ 0.66
HDAC6-230ENST00000488543 GRIN2BQ13224 1484 aa19.17■□□□□ 0.66
HDAC6-230ENST00000488543 PBRM1Q86U86 1689 aa19.14■□□□□ 0.65
HDAC6-230ENST00000488543 CLIP1P30622 1438 aa19.14■□□□□ 0.65
HDAC6-230ENST00000488543 CUL7Q14999 1698 aa19.12■□□□□ 0.65
HDAC6-230ENST00000488543 SNAPC4Q5SXM2 1469 aa19.1■□□□□ 0.65
HDAC6-230ENST00000488543 FHAD1B1AJZ9 1412 aa19.08■□□□□ 0.65
HDAC6-230ENST00000488543 FBLN2P98095 1184 aa19.07■□□□□ 0.64
HDAC6-230ENST00000488543 TRIM26Q12899 539 aaPredicted RBP19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms