RNA–Protein interactions for RNA: ENST00000254193.10

SNRPA1-201, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRPA1, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-201ENST00000254193 NISCHQ9Y2I1 1504 aa43.63■■■■■ 4.57
SNRPA1-201ENST00000254193 CCDC180Q9P1Z9 1646 aa38.64■■■■□ 3.78
SNRPA1-201ENST00000254193 ABCC9O60706 1549 aa38.13■■■■□ 3.69
SNRPA1-201ENST00000254193 DCAF8L2P0C7V8 631 aa36.68■■■■□ 3.46
SNRPA1-201ENST00000254193 RB1CC1Q8TDY2 1594 aa36.51■■■■□ 3.44
SNRPA1-201ENST00000254193 NACADO15069 1562 aa36.46■■■■□ 3.43
SNRPA1-201ENST00000254193 ZCCHC6Q5VYS8 1495 aaKnown RBP36.31■■■■□ 3.4
SNRPA1-201ENST00000254193 MYO15BQ96JP2 1530 aa36.2■■■■□ 3.39
SNRPA1-201ENST00000254193 DCAF1Q9Y4B6 1507 aa36.03■■■■□ 3.36
SNRPA1-201ENST00000254193 PABPN1Q86U42 306 aaKnown RBP eCLIP35.72■■■■□ 3.31
SNRPA1-201ENST00000254193 UNC13AQ9UPW8 1703 aa35.52■■■■□ 3.28
SNRPA1-201ENST00000254193 BICRAQ9NZM4 1560 aa35.43■■■■□ 3.26
SNRPA1-201ENST00000254193 SCRIBQ14160 1630 aa35.39■■■■□ 3.26
SNRPA1-201ENST00000254193 DNAJC5BQ9UF47 199 aa35.17■■■■□ 3.22
SNRPA1-201ENST00000254193 SHROOM4Q9ULL8 1493 aa34.99■■■■□ 3.19
SNRPA1-201ENST00000254193 EIF4G1Q04637 1599 aaKnown RBP34.51■■■■□ 3.12
SNRPA1-201ENST00000254193 CC2D2AQ9P2K1 1620 aa34.38■■■■□ 3.09
SNRPA1-201ENST00000254193 CECR2Q9BXF3 1484 aa34.25■■■■□ 3.07
SNRPA1-201ENST00000254193 SMARCA4P51532 1647 aa33.81■■■■□ 3
SNRPA1-201ENST00000254193 BAZ1AQ9NRL2 1556 aaPredicted RBP33.77■■■■□ 3
SNRPA1-201ENST00000254193 ATAD2BQ9ULI0 1458 aa33.74■■■□□ 2.99
SNRPA1-201ENST00000254193 NCAPD3P42695 1498 aa33.72■■■□□ 2.99
SNRPA1-201ENST00000254193 MROH2BQ7Z745 1585 aa33.65■■■□□ 2.98
SNRPA1-201ENST00000254193 SMARCA2P51531 1590 aa33.62■■■□□ 2.97
SNRPA1-201ENST00000254193 HMGXB3Q12766 1538 aa33.46■■■□□ 2.95
SNRPA1-201ENST00000254193 PEG3Q9GZU2 1588 aa33.46■■■□□ 2.95
SNRPA1-201ENST00000254193 BAZ1BQ9UIG0 1483 aaKnown RBP33.44■■■□□ 2.94
SNRPA1-201ENST00000254193 RSF1Q96T23 1441 aaPredicted RBP33.28■■■□□ 2.92
SNRPA1-201ENST00000254193 WIZO95785 1651 aa33.21■■■□□ 2.91
SNRPA1-201ENST00000254193 NESP48681 1621 aa32.97■■■□□ 2.87
SNRPA1-201ENST00000254193 TOP2AP11388 1531 aaKnown RBP32.87■■■□□ 2.85
SNRPA1-201ENST00000254193 ERCC6Q03468 1493 aa32.85■■■□□ 2.85
SNRPA1-201ENST00000254193 CADPSQ9ULU8 1353 aa32.77■■■□□ 2.84
SNRPA1-201ENST00000254193 LAMC3Q9Y6N6 1575 aa32.75■■■□□ 2.83
SNRPA1-201ENST00000254193 PDS5BQ9NTI5 1447 aa32.62■■■□□ 2.81
SNRPA1-201ENST00000254193 CCDC88BA6NC98 1476 aa32.56■■■□□ 2.8
SNRPA1-201ENST00000254193 CFTRP13569 1480 aa32.52■■■□□ 2.8
SNRPA1-201ENST00000254193 SUPT5HO00267 1087 aaKnown RBP32.49■■■□□ 2.79
SNRPA1-201ENST00000254193 CUX2O14529 1486 aa32.47■■■□□ 2.79
SNRPA1-201ENST00000254193 KIF21AQ7Z4S6 1674 aa32.4■■■□□ 2.78
SNRPA1-201ENST00000254193 FANCD2Q9BXW9 1451 aa32.37■■■□□ 2.77
SNRPA1-201ENST00000254193 THOC2Q8NI27 1593 aaKnown RBP32.35■■■□□ 2.77
SNRPA1-201ENST00000254193 CEP164Q9UPV0 1460 aa32.3■■■□□ 2.76
SNRPA1-201ENST00000254193 MRC2Q9UBG0 1479 aa32.28■■■□□ 2.76
SNRPA1-201ENST00000254193 WDR62O43379 1518 aa32.13■■■□□ 2.73
SNRPA1-201ENST00000254193 URB2Q14146 1524 aaKnown RBP32.05■■■□□ 2.72
SNRPA1-201ENST00000254193 PRDM2Q13029 1718 aa31.98■■■□□ 2.71
SNRPA1-201ENST00000254193 TOPBP1Q92547 1522 aa31.83■■■□□ 2.69
SNRPA1-201ENST00000254193 ABCC8Q09428 1581 aa31.77■■■□□ 2.68
SNRPA1-201ENST00000254193 DNMBPQ6XZF7 1577 aa31.73■■■□□ 2.67
SNRPA1-201ENST00000254193 DNAJC5Q9H3Z4 198 aa31.68■■■□□ 2.66
SNRPA1-201ENST00000254193 IFT140Q96RY7 1462 aa31.64■■■□□ 2.66
SNRPA1-201ENST00000254193 CUX1P39880 1505 aa31.56■■■□□ 2.64
SNRPA1-201ENST00000254193 POLA1P09884 1462 aaPredicted RBP31.56■■■□□ 2.64
SNRPA1-201ENST00000254193 ZNF608Q9ULD9 1512 aaPredicted RBP31.55■■■□□ 2.64
SNRPA1-201ENST00000254193 SOGA1O94964 1423 aa31.48■■■□□ 2.63
SNRPA1-201ENST00000254193 FGD5Q6ZNL6 1462 aa31.47■■■□□ 2.63
SNRPA1-201ENST00000254193 RAD54L2Q9Y4B4 1467 aa31.47■■■□□ 2.63
SNRPA1-201ENST00000254193 TARBP1Q13395 1621 aaKnown RBP31.42■■■□□ 2.62
SNRPA1-201ENST00000254193 AQRO60306 1485 aaKnown RBP eCLIP31.4■■■□□ 2.628e-7■■□□□ 14.1
SNRPA1-201ENST00000254193 WRNQ14191 1432 aaPredicted RBP eCLIP31.36■■■□□ 2.61
SNRPA1-201ENST00000254193 TDRD9Q8NDG6 1382 aaKnown RBP31.35■■■□□ 2.61
SNRPA1-201ENST00000254193 EIF4G3O43432 1585 aaKnown RBP31.3■■■□□ 2.6
SNRPA1-201ENST00000254193 SYNJ1O43426 1573 aa31.23■■■□□ 2.59
SNRPA1-201ENST00000254193 OSCARQ8IYS5 282 aa31.23■■■□□ 2.59
SNRPA1-201ENST00000254193 TOP2BQ02880 1626 aa31.2■■■□□ 2.58
SNRPA1-201ENST00000254193 ABCA10Q8WWZ4 1543 aa31.14■■■□□ 2.58
SNRPA1-201ENST00000254193 BIVM-ERCC5R4GMW8 1640 aa31.14■■■□□ 2.58
SNRPA1-201ENST00000254193 FBLN2P98095 1184 aa31.09■■■□□ 2.57
SNRPA1-201ENST00000254193 WDR97A6NE52 1622 aa31.08■■■□□ 2.57
SNRPA1-201ENST00000254193 GRIN2BQ13224 1484 aa31.07■■■□□ 2.56
SNRPA1-201ENST00000254193 GAPVD1Q14C86 1478 aa31.07■■■□□ 2.56
SNRPA1-201ENST00000254193 SNAPC4Q5SXM2 1469 aa31.05■■■□□ 2.56
SNRPA1-201ENST00000254193 MAGI1Q96QZ7 1491 aaPredicted RBP30.96■■■□□ 2.55
SNRPA1-201ENST00000254193 CHMP7Q8WUX9 453 aaPredicted RBP30.96■■■□□ 2.55
SNRPA1-201ENST00000254193 ABCA5Q8WWZ7 1642 aa30.95■■■□□ 2.55
SNRPA1-201ENST00000254193 SYNJ2O15056 1496 aa30.87■■■□□ 2.53
SNRPA1-201ENST00000254193 CHD1O14646 1710 aa30.85■■■□□ 2.53
SNRPA1-201ENST00000254193 PBRM1Q86U86 1689 aa30.83■■■□□ 2.53
SNRPA1-201ENST00000254193 ERICH3Q5RHP9 1530 aa30.73■■■□□ 2.51
SNRPA1-201ENST00000254193 FHAD1B1AJZ9 1412 aa30.72■■■□□ 2.51
SNRPA1-201ENST00000254193 KIF27Q86VH2 1401 aa30.72■■■□□ 2.51
SNRPA1-201ENST00000254193 ADAMTS12P58397 1594 aa30.68■■■□□ 2.5
SNRPA1-201ENST00000254193 TRIM41Q8WV44 630 aa30.67■■■□□ 2.5
SNRPA1-201ENST00000254193 GRIN2AQ12879 1464 aa30.66■■■□□ 2.5
SNRPA1-201ENST00000254193 IGF1RP08069 1367 aa30.65■■■□□ 2.5
SNRPA1-201ENST00000254193 ARHGEF11O15085 1522 aa30.63■■■□□ 2.49
SNRPA1-201ENST00000254193 CLASP1Q7Z460 1538 aa30.62■■■□□ 2.49
SNRPA1-201ENST00000254193 RIMBP3CA6NJZ7 1639 aa30.58■■■□□ 2.49
SNRPA1-201ENST00000254193 RIMBP3BA6NNM3 1639 aa30.58■■■□□ 2.49
SNRPA1-201ENST00000254193 RIMBP3Q9UFD9 1639 aa30.58■■■□□ 2.49
SNRPA1-201ENST00000254193 NUP160Q12769 1436 aa30.54■■■□□ 2.48
SNRPA1-201ENST00000254193 CYB5RLQ6IPT4 315 aa30.49■■■□□ 2.47
SNRPA1-201ENST00000254193 CEP170Q5SW79 1584 aa30.48■■■□□ 2.47
SNRPA1-201ENST00000254193 CARMIL1Q5VZK9 1371 aa30.45■■■□□ 2.47
SNRPA1-201ENST00000254193 RUSC2Q8N2Y8 1516 aa30.45■■■□□ 2.47
SNRPA1-201ENST00000254193 ARAP1Q96P48 1450 aa30.4■■■□□ 2.46
SNRPA1-201ENST00000254193 CUL7Q14999 1698 aa30.36■■■□□ 2.45
SNRPA1-201ENST00000254193 JPH4Q96JJ6 628 aa30.31■■■□□ 2.44
SNRPA1-201ENST00000254193 ERCC6L2Q5T890 1561 aa30.25■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms