Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TRIM39Q9HCM9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.11■■□□□ 1.29
TRIM39Q9HCM9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TRIM39Q9HCM9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 BX664725.1-201ENST00000438252 379 ntBASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 MIR6089-201ENST00000616698 64 ntBASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.1■■□□□ 1.29
TRIM39Q9HCM9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM39Q9HCM9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 AC239859.2-201ENST00000444165 318 ntBASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.08■■□□□ 1.29
TRIM39Q9HCM9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
TRIM39Q9HCM9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
TRIM39Q9HCM9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TRIM39Q9HCM9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.07■■□□□ 1.28
TRIM39Q9HCM9 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.07■■□□□ 1.28
TRIM39Q9HCM9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
TRIM39Q9HCM9 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.07■■□□□ 1.28
TRIM39Q9HCM9 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.07■■□□□ 1.28
TRIM39Q9HCM9 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 AC022211.4-201ENST00000625094 2161 ntBASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
TRIM39Q9HCM9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM39Q9HCM9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.05■■□□□ 1.28
TRIM39Q9HCM9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.05■■□□□ 1.28
TRIM39Q9HCM9 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.05■■□□□ 1.28
TRIM39Q9HCM9 KRT125P-201ENST00000546827 989 ntBASIC23.05■■□□□ 1.28
TRIM39Q9HCM9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM39Q9HCM9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.05■■□□□ 1.28
TRIM39Q9HCM9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM39Q9HCM9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TRIM39Q9HCM9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.04■■□□□ 1.28
TRIM39Q9HCM9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
TRIM39Q9HCM9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
TRIM39Q9HCM9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.04■■□□□ 1.28
TRIM39Q9HCM9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TRIM39Q9HCM9 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TRIM39Q9HCM9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.04■■□□□ 1.28
TRIM39Q9HCM9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 AC021242.3-201ENST00000607598 1377 ntBASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 AC020928.2-201ENST00000588717 2197 ntBASIC23.03■■□□□ 1.28
TRIM39Q9HCM9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRIM39Q9HCM9 AF131216.4-201ENST00000638924 1588 ntBASIC23.02■■□□□ 1.28
TRIM39Q9HCM9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.02■■□□□ 1.28
TRIM39Q9HCM9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TRIM39Q9HCM9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRIM39Q9HCM9 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRIM39Q9HCM9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.01■■□□□ 1.27
TRIM39Q9HCM9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.01■■□□□ 1.27
TRIM39Q9HCM9 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms