Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.61■□□□□ 0.89
SKA3Q8IX90 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SKA3Q8IX90 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SKA3Q8IX90 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SKA3Q8IX90 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA3Q8IX90 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA3Q8IX90 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.6■□□□□ 0.89
SKA3Q8IX90 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA3Q8IX90 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SKA3Q8IX90 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.6■□□□□ 0.89
SKA3Q8IX90 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.6■□□□□ 0.89
SKA3Q8IX90 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SKA3Q8IX90 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA3Q8IX90 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA3Q8IX90 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA3Q8IX90 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA3Q8IX90 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.59■□□□□ 0.89
SKA3Q8IX90 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SKA3Q8IX90 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.59■□□□□ 0.89
SKA3Q8IX90 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SKA3Q8IX90 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SKA3Q8IX90 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SKA3Q8IX90 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SKA3Q8IX90 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.58■□□□□ 0.89
SKA3Q8IX90 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SKA3Q8IX90 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SKA3Q8IX90 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SKA3Q8IX90 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SKA3Q8IX90 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.58■□□□□ 0.88
SKA3Q8IX90 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.58■□□□□ 0.88
SKA3Q8IX90 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SKA3Q8IX90 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SKA3Q8IX90 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SKA3Q8IX90 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SKA3Q8IX90 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SKA3Q8IX90 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.57■□□□□ 0.88
SKA3Q8IX90 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.57■□□□□ 0.88
SKA3Q8IX90 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SKA3Q8IX90 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SKA3Q8IX90 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA3Q8IX90 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA3Q8IX90 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA3Q8IX90 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.56■□□□□ 0.88
SKA3Q8IX90 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SKA3Q8IX90 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.56■□□□□ 0.88
SKA3Q8IX90 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SKA3Q8IX90 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.55■□□□□ 0.88
SKA3Q8IX90 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA3Q8IX90 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA3Q8IX90 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SKA3Q8IX90 AC022616.5-201ENST00000518796 181 ntBASIC20.55■□□□□ 0.88
SKA3Q8IX90 MIR6089-201ENST00000616698 64 ntBASIC20.55■□□□□ 0.88
SKA3Q8IX90 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA3Q8IX90 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SKA3Q8IX90 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.54■□□□□ 0.88
SKA3Q8IX90 KRT8P33-201ENST00000508125 1423 ntBASIC20.54■□□□□ 0.88
SKA3Q8IX90 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SKA3Q8IX90 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SKA3Q8IX90 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA3Q8IX90 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.54■□□□□ 0.88
SKA3Q8IX90 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.54■□□□□ 0.88
SKA3Q8IX90 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.54■□□□□ 0.88
SKA3Q8IX90 AP003733.4-201ENST00000623785 1697 ntBASIC20.54■□□□□ 0.88
SKA3Q8IX90 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SKA3Q8IX90 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SKA3Q8IX90 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SKA3Q8IX90 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 AC103834.1-201ENST00000520383 144 ntBASIC20.53■□□□□ 0.88
SKA3Q8IX90 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 MIR4508-201ENST00000584178 70 ntBASIC20.53■□□□□ 0.88
SKA3Q8IX90 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SKA3Q8IX90 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.53■□□□□ 0.88
SKA3Q8IX90 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.52■□□□□ 0.88
SKA3Q8IX90 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA3Q8IX90 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA3Q8IX90 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.52■□□□□ 0.88
SKA3Q8IX90 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.52■□□□□ 0.88
SKA3Q8IX90 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA3Q8IX90 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SKA3Q8IX90 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
SKA3Q8IX90 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SKA3Q8IX90 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SKA3Q8IX90 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SKA3Q8IX90 AC090877.2-201ENST00000558441 1738 ntBASIC20.5■□□□□ 0.87
SKA3Q8IX90 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SKA3Q8IX90 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.5■□□□□ 0.87
SKA3Q8IX90 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.5■□□□□ 0.87
SKA3Q8IX90 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.5■□□□□ 0.87
SKA3Q8IX90 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SKA3Q8IX90 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SKA3Q8IX90 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SKA3Q8IX90 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.5■□□□□ 0.87
SKA3Q8IX90 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA3Q8IX90 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms