Protein–RNA interactions for Protein: Q86Y07

VRK2, Serine/threonine-protein kinase VRK2, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2Q86Y07 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
VRK2Q86Y07 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK2Q86Y07 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK2Q86Y07 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VRK2Q86Y07 MIR6765-201ENST00000614092 87 ntBASIC21.57■■□□□ 1.04
VRK2Q86Y07 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK2Q86Y07 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.57■■□□□ 1.04
VRK2Q86Y07 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VRK2Q86Y07 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK2Q86Y07 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VRK2Q86Y07 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VRK2Q86Y07 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.56■■□□□ 1.04
VRK2Q86Y07 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.56■■□□□ 1.04
VRK2Q86Y07 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VRK2Q86Y07 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VRK2Q86Y07 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VRK2Q86Y07 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK2Q86Y07 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.55■■□□□ 1.04
VRK2Q86Y07 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VRK2Q86Y07 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK2Q86Y07 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.55■■□□□ 1.04
VRK2Q86Y07 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.55■■□□□ 1.04
VRK2Q86Y07 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.55■■□□□ 1.04
VRK2Q86Y07 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK2Q86Y07 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK2Q86Y07 AC004812.2-201ENST00000611079 2094 ntBASIC21.55■■□□□ 1.04
VRK2Q86Y07 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.55■■□□□ 1.04
VRK2Q86Y07 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK2Q86Y07 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VRK2Q86Y07 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK2Q86Y07 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK2Q86Y07 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.54■■□□□ 1.04
VRK2Q86Y07 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
VRK2Q86Y07 AC087393.1-201ENST00000582896 145 ntBASIC21.54■■□□□ 1.04
VRK2Q86Y07 AC129492.7-201ENST00000622992 756 ntBASIC21.54■■□□□ 1.04
VRK2Q86Y07 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
VRK2Q86Y07 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VRK2Q86Y07 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VRK2Q86Y07 KRT18P60-201ENST00000312876 1297 ntBASIC21.53■■□□□ 1.04
VRK2Q86Y07 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.53■■□□□ 1.04
VRK2Q86Y07 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VRK2Q86Y07 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.53■■□□□ 1.04
VRK2Q86Y07 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VRK2Q86Y07 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.53■■□□□ 1.04
VRK2Q86Y07 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VRK2Q86Y07 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VRK2Q86Y07 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.52■■□□□ 1.04
VRK2Q86Y07 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VRK2Q86Y07 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VRK2Q86Y07 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
VRK2Q86Y07 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.52■■□□□ 1.04
VRK2Q86Y07 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VRK2Q86Y07 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VRK2Q86Y07 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.51■■□□□ 1.03
VRK2Q86Y07 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VRK2Q86Y07 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VRK2Q86Y07 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
VRK2Q86Y07 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
VRK2Q86Y07 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VRK2Q86Y07 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VRK2Q86Y07 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.49■■□□□ 1.03
VRK2Q86Y07 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.49■■□□□ 1.03
VRK2Q86Y07 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.49■■□□□ 1.03
VRK2Q86Y07 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.49■■□□□ 1.03
VRK2Q86Y07 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
VRK2Q86Y07 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK2Q86Y07 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VRK2Q86Y07 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK2Q86Y07 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.48■■□□□ 1.03
VRK2Q86Y07 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
VRK2Q86Y07 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VRK2Q86Y07 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VRK2Q86Y07 ABCB10P4-201ENST00000566803 2184 ntBASIC21.48■■□□□ 1.03
VRK2Q86Y07 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.48■■□□□ 1.03
VRK2Q86Y07 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VRK2Q86Y07 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
VRK2Q86Y07 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VRK2Q86Y07 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK2Q86Y07 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.47■■□□□ 1.03
VRK2Q86Y07 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK2Q86Y07 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK2Q86Y07 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK2Q86Y07 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK2Q86Y07 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK2Q86Y07 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK2Q86Y07 ABHD17AP5-201ENST00000580133 923 ntBASIC21.47■■□□□ 1.03
VRK2Q86Y07 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.47■■□□□ 1.03
VRK2Q86Y07 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK2Q86Y07 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.47■■□□□ 1.03
VRK2Q86Y07 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.46■■□□□ 1.03
VRK2Q86Y07 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK2Q86Y07 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK2Q86Y07 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK2Q86Y07 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VRK2Q86Y07 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK2Q86Y07 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK2Q86Y07 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK2Q86Y07 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.46■■□□□ 1.03
VRK2Q86Y07 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VRK2Q86Y07 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms