Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC45.12■■■■■ 4.81
SHROOM4Q9ULL8 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC45.12■■■■■ 4.81
SHROOM4Q9ULL8 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC45.12■■■■■ 4.81
SHROOM4Q9ULL8 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC45.12■■■■■ 4.81
SHROOM4Q9ULL8 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC45.11■■■■■ 4.81
SHROOM4Q9ULL8 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC45.11■■■■■ 4.81
SHROOM4Q9ULL8 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC45.11■■■■■ 4.81
SHROOM4Q9ULL8 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC45.11■■■■■ 4.81
SHROOM4Q9ULL8 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC45.1■■■■■ 4.81
SHROOM4Q9ULL8 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC45.1■■■■■ 4.81
SHROOM4Q9ULL8 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC45.1■■■■■ 4.81
SHROOM4Q9ULL8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC45.1■■■■■ 4.81
SHROOM4Q9ULL8 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC45.1■■■■■ 4.81
SHROOM4Q9ULL8 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC45.1■■■■■ 4.81
SHROOM4Q9ULL8 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC45.09■■■■■ 4.81
SHROOM4Q9ULL8 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC45.09■■■■■ 4.81
SHROOM4Q9ULL8 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC45.09■■■■■ 4.81
SHROOM4Q9ULL8 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC45.09■■■■■ 4.81
SHROOM4Q9ULL8 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC45.09■■■■■ 4.81
SHROOM4Q9ULL8 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC45.08■■■■■ 4.81
SHROOM4Q9ULL8 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC45.08■■■■■ 4.81
SHROOM4Q9ULL8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC45.08■■■■■ 4.81
SHROOM4Q9ULL8 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC45.07■■■■■ 4.81
SHROOM4Q9ULL8 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC45.07■■■■■ 4.81
SHROOM4Q9ULL8 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC45.06■■■■■ 4.8
SHROOM4Q9ULL8 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC45.06■■■■■ 4.8
SHROOM4Q9ULL8 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC45.05■■■■■ 4.8
SHROOM4Q9ULL8 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC45.05■■■■■ 4.8
SHROOM4Q9ULL8 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC45.05■■■■■ 4.8
SHROOM4Q9ULL8 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC45.05■■■■■ 4.8
SHROOM4Q9ULL8 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC45.05■■■■■ 4.8
SHROOM4Q9ULL8 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC45.05■■■■■ 4.8
SHROOM4Q9ULL8 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC45.04■■■■■ 4.8
SHROOM4Q9ULL8 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC45.04■■■■■ 4.8
SHROOM4Q9ULL8 AK3-203ENST00000447596 705 ntTSL 2 BASIC45.04■■■■■ 4.8
SHROOM4Q9ULL8 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC45.03■■■■■ 4.8
SHROOM4Q9ULL8 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC45.03■■■■■ 4.8
SHROOM4Q9ULL8 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC45.03■■■■■ 4.8
SHROOM4Q9ULL8 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC45.03■■■■■ 4.8
SHROOM4Q9ULL8 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC45.02■■■■■ 4.8
SHROOM4Q9ULL8 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC45.02■■■■■ 4.8
SHROOM4Q9ULL8 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC45.01■■■■■ 4.8
SHROOM4Q9ULL8 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC45.01■■■■■ 4.8
SHROOM4Q9ULL8 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC45.01■■■■■ 4.8
SHROOM4Q9ULL8 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC45.01■■■■■ 4.8
SHROOM4Q9ULL8 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC45.01■■■■■ 4.8
SHROOM4Q9ULL8 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC45■■■■■ 4.79
SHROOM4Q9ULL8 CD72-202ENST00000378430 585 ntTSL 3 BASIC45■■■■■ 4.79
SHROOM4Q9ULL8 ANKRD20A6P-201ENST00000618763 204 ntBASIC45■■■■■ 4.79
SHROOM4Q9ULL8 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC45■■■■■ 4.79
SHROOM4Q9ULL8 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC45■■■■■ 4.79
SHROOM4Q9ULL8 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC45■■■■■ 4.79
SHROOM4Q9ULL8 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC45■■■■■ 4.79
SHROOM4Q9ULL8 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC44.98■■■■■ 4.79
SHROOM4Q9ULL8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC44.98■■■■■ 4.79
SHROOM4Q9ULL8 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC44.98■■■■■ 4.79
SHROOM4Q9ULL8 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC44.98■■■■■ 4.79
SHROOM4Q9ULL8 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC44.98■■■■■ 4.79
SHROOM4Q9ULL8 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 EDA-201ENST00000338901 1233 ntBASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 MIR6821-201ENST00000617625 74 ntBASIC44.97■■■■■ 4.79
SHROOM4Q9ULL8 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC44.96■■■■■ 4.79
SHROOM4Q9ULL8 PBX2P1-201ENST00000493219 1291 ntBASIC44.96■■■■■ 4.79
SHROOM4Q9ULL8 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC44.96■■■■■ 4.79
SHROOM4Q9ULL8 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC44.96■■■■■ 4.79
SHROOM4Q9ULL8 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC44.95■■■■■ 4.79
SHROOM4Q9ULL8 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC44.95■■■■■ 4.79
SHROOM4Q9ULL8 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC44.95■■■■■ 4.79
SHROOM4Q9ULL8 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC44.95■■■■■ 4.79
SHROOM4Q9ULL8 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC44.95■■■■■ 4.79
SHROOM4Q9ULL8 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC44.94■■■■■ 4.78
SHROOM4Q9ULL8 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC44.93■■■■■ 4.78
SHROOM4Q9ULL8 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC44.93■■■■■ 4.78
SHROOM4Q9ULL8 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC44.93■■■■■ 4.78
SHROOM4Q9ULL8 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC44.93■■■■■ 4.78
SHROOM4Q9ULL8 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC44.93■■■■■ 4.78
SHROOM4Q9ULL8 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC44.92■■■■■ 4.78
SHROOM4Q9ULL8 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC44.92■■■■■ 4.78
SHROOM4Q9ULL8 TFPT-201ENST00000391757 774 ntTSL 5 BASIC44.92■■■■■ 4.78
SHROOM4Q9ULL8 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC44.92■■■■■ 4.78
SHROOM4Q9ULL8 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC44.91■■■■■ 4.78
SHROOM4Q9ULL8 ERN1-208ENST00000606895 2068 ntBASIC44.9■■■■■ 4.78
SHROOM4Q9ULL8 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC44.9■■■■■ 4.78
SHROOM4Q9ULL8 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC44.9■■■■■ 4.78
SHROOM4Q9ULL8 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC44.89■■■■■ 4.78
SHROOM4Q9ULL8 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC44.89■■■■■ 4.78
SHROOM4Q9ULL8 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC44.88■■■■■ 4.78
SHROOM4Q9ULL8 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC44.88■■■■■ 4.78
SHROOM4Q9ULL8 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC44.87■■■■■ 4.77
SHROOM4Q9ULL8 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC44.87■■■■■ 4.77
SHROOM4Q9ULL8 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC44.87■■■■■ 4.77
SHROOM4Q9ULL8 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC44.87■■■■■ 4.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms