Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF404Q494X3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
ZNF404Q494X3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
ZNF404Q494X3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.12■□□□□ 0.97
ZNF404Q494X3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.12■□□□□ 0.97
ZNF404Q494X3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
ZNF404Q494X3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF404Q494X3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF404Q494X3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF404Q494X3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF404Q494X3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
ZNF404Q494X3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
ZNF404Q494X3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF404Q494X3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF404Q494X3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF404Q494X3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.11■□□□□ 0.97
ZNF404Q494X3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
ZNF404Q494X3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF404Q494X3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
ZNF404Q494X3 C9orf163-202ENST00000624034 2573 ntBASIC21.11■□□□□ 0.97
ZNF404Q494X3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF404Q494X3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.11■□□□□ 0.97
ZNF404Q494X3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF404Q494X3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.1■□□□□ 0.97
ZNF404Q494X3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF404Q494X3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF404Q494X3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.1■□□□□ 0.97
ZNF404Q494X3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF404Q494X3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF404Q494X3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.1■□□□□ 0.97
ZNF404Q494X3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF404Q494X3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF404Q494X3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF404Q494X3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
ZNF404Q494X3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF404Q494X3 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
ZNF404Q494X3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF404Q494X3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF404Q494X3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF404Q494X3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF404Q494X3 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
ZNF404Q494X3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF404Q494X3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF404Q494X3 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF404Q494X3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF404Q494X3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF404Q494X3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF404Q494X3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.07■□□□□ 0.96
ZNF404Q494X3 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF404Q494X3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
ZNF404Q494X3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF404Q494X3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.07■□□□□ 0.96
ZNF404Q494X3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
ZNF404Q494X3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.07■□□□□ 0.96
ZNF404Q494X3 MIR219A2-201ENST00000608502 1504 ntBASIC21.07■□□□□ 0.96
ZNF404Q494X3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF404Q494X3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF404Q494X3 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF404Q494X3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
ZNF404Q494X3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF404Q494X3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF404Q494X3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF404Q494X3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF404Q494X3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF404Q494X3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF404Q494X3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.05■□□□□ 0.96
ZNF404Q494X3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
ZNF404Q494X3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.05■□□□□ 0.96
ZNF404Q494X3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.05■□□□□ 0.96
ZNF404Q494X3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF404Q494X3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF404Q494X3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
ZNF404Q494X3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF404Q494X3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF404Q494X3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.04■□□□□ 0.96
ZNF404Q494X3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
ZNF404Q494X3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF404Q494X3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF404Q494X3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF404Q494X3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
ZNF404Q494X3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF404Q494X3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF404Q494X3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF404Q494X3 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF404Q494X3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF404Q494X3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF404Q494X3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF404Q494X3 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF404Q494X3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.03■□□□□ 0.96
ZNF404Q494X3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.03■□□□□ 0.96
ZNF404Q494X3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
ZNF404Q494X3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.03■□□□□ 0.96
ZNF404Q494X3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF404Q494X3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.02■□□□□ 0.96
ZNF404Q494X3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.02■□□□□ 0.96
ZNF404Q494X3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.02■□□□□ 0.96
ZNF404Q494X3 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.02■□□□□ 0.96
ZNF404Q494X3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
ZNF404Q494X3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
ZNF404Q494X3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.02■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms