Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
TTC3P53804 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
TTC3P53804 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.58■■□□□ 1.69
TTC3P53804 SNX5-217ENST00000606557 1087 ntBASIC25.58■■□□□ 1.69
TTC3P53804 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.58■■□□□ 1.68
TTC3P53804 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
TTC3P53804 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TTC3P53804 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TTC3P53804 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TTC3P53804 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.57■■□□□ 1.68
TTC3P53804 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.57■■□□□ 1.68
TTC3P53804 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC25.57■■□□□ 1.68
TTC3P53804 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
TTC3P53804 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
TTC3P53804 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TTC3P53804 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC25.57■■□□□ 1.68
TTC3P53804 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
TTC3P53804 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.56■■□□□ 1.68
TTC3P53804 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
TTC3P53804 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
TTC3P53804 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TTC3P53804 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
TTC3P53804 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
TTC3P53804 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TTC3P53804 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TTC3P53804 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TTC3P53804 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.55■■□□□ 1.68
TTC3P53804 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
TTC3P53804 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.55■■□□□ 1.68
TTC3P53804 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TTC3P53804 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TTC3P53804 AC096631.2-201ENST00000436136 790 ntBASIC25.54■■□□□ 1.68
TTC3P53804 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC25.54■■□□□ 1.68
TTC3P53804 FOXO3B-201ENST00000395675 1928 ntBASIC25.54■■□□□ 1.68
TTC3P53804 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
TTC3P53804 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TTC3P53804 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.54■■□□□ 1.68
TTC3P53804 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
TTC3P53804 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
TTC3P53804 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
TTC3P53804 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.53■■□□□ 1.68
TTC3P53804 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TTC3P53804 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TTC3P53804 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
TTC3P53804 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TTC3P53804 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.53■■□□□ 1.68
TTC3P53804 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
TTC3P53804 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TTC3P53804 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
TTC3P53804 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TTC3P53804 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TTC3P53804 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TTC3P53804 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
TTC3P53804 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.51■■□□□ 1.67
TTC3P53804 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TTC3P53804 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TTC3P53804 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TTC3P53804 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
TTC3P53804 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TTC3P53804 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.5■■□□□ 1.67
TTC3P53804 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC25.5■■□□□ 1.67
TTC3P53804 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.5■■□□□ 1.67
TTC3P53804 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.5■■□□□ 1.67
TTC3P53804 AC133561.4-201ENST00000566112 224 ntBASIC25.49■■□□□ 1.67
TTC3P53804 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
TTC3P53804 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
TTC3P53804 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.49■■□□□ 1.67
TTC3P53804 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
TTC3P53804 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
TTC3P53804 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.48■■□□□ 1.67
TTC3P53804 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.48■■□□□ 1.67
TTC3P53804 AC096887.2-201ENST00000623443 1957 ntBASIC25.48■■□□□ 1.67
TTC3P53804 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC25.48■■□□□ 1.67
TTC3P53804 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.48■■□□□ 1.67
TTC3P53804 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.48■■□□□ 1.67
TTC3P53804 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TTC3P53804 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TTC3P53804 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.47■■□□□ 1.67
TTC3P53804 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
TTC3P53804 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TTC3P53804 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.47■■□□□ 1.67
TTC3P53804 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25.47■■□□□ 1.67
TTC3P53804 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.47■■□□□ 1.67
TTC3P53804 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TTC3P53804 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.46■■□□□ 1.67
TTC3P53804 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
TTC3P53804 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.46■■□□□ 1.67
TTC3P53804 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
TTC3P53804 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
TTC3P53804 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
TTC3P53804 SUDS3P1-201ENST00000505831 966 ntBASIC25.46■■□□□ 1.67
TTC3P53804 AC005837.3-201ENST00000612163 286 ntBASIC25.46■■□□□ 1.67
TTC3P53804 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
TTC3P53804 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
TTC3P53804 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC25.45■■□□□ 1.66
TTC3P53804 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
TTC3P53804 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
TTC3P53804 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.44■■□□□ 1.66
TTC3P53804 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
TTC3P53804 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms