Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
COL18A1P39060 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
COL18A1P39060 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC31.65■■■□□ 2.66
COL18A1P39060 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC31.65■■■□□ 2.66
COL18A1P39060 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
COL18A1P39060 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
COL18A1P39060 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL18A1P39060 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC31.64■■■□□ 2.66
COL18A1P39060 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC31.63■■■□□ 2.65
COL18A1P39060 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
COL18A1P39060 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
COL18A1P39060 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL18A1P39060 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.63■■■□□ 2.65
COL18A1P39060 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
COL18A1P39060 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
COL18A1P39060 FOXO3B-201ENST00000395675 1928 ntBASIC31.61■■■□□ 2.65
COL18A1P39060 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC31.6■■■□□ 2.65
COL18A1P39060 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL18A1P39060 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL18A1P39060 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
COL18A1P39060 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC31.58■■■□□ 2.65
COL18A1P39060 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC31.58■■■□□ 2.65
COL18A1P39060 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL18A1P39060 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL18A1P39060 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL18A1P39060 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL18A1P39060 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.65
COL18A1P39060 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL18A1P39060 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL18A1P39060 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL18A1P39060 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC31.57■■■□□ 2.64
COL18A1P39060 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL18A1P39060 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC31.56■■■□□ 2.64
COL18A1P39060 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
COL18A1P39060 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL18A1P39060 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL18A1P39060 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL18A1P39060 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL18A1P39060 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC31.54■■■□□ 2.64
COL18A1P39060 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL18A1P39060 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC31.54■■■□□ 2.64
COL18A1P39060 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC31.54■■■□□ 2.64
COL18A1P39060 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC31.54■■■□□ 2.64
COL18A1P39060 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC31.54■■■□□ 2.64
COL18A1P39060 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL18A1P39060 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
COL18A1P39060 MIR6722-201ENST00000617286 78 ntBASIC31.53■■■□□ 2.64
COL18A1P39060 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL18A1P39060 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC31.53■■■□□ 2.64
COL18A1P39060 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL18A1P39060 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
COL18A1P39060 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
COL18A1P39060 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL18A1P39060 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
COL18A1P39060 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL18A1P39060 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC31.52■■■□□ 2.64
COL18A1P39060 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC31.52■■■□□ 2.64
COL18A1P39060 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.64
COL18A1P39060 PBX2P1-201ENST00000493219 1291 ntBASIC31.51■■■□□ 2.64
COL18A1P39060 AC135279.3-201ENST00000610945 1311 ntBASIC31.51■■■□□ 2.64
COL18A1P39060 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL18A1P39060 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
COL18A1P39060 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
COL18A1P39060 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC31.51■■■□□ 2.63
COL18A1P39060 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL18A1P39060 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC31.49■■■□□ 2.63
COL18A1P39060 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC31.49■■■□□ 2.63
COL18A1P39060 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
COL18A1P39060 UNC93B3-201ENST00000308076 687 ntBASIC31.48■■■□□ 2.63
COL18A1P39060 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
COL18A1P39060 LGR4-203ENST00000480977 492 ntTSL 2 BASIC31.48■■■□□ 2.63
COL18A1P39060 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC31.48■■■□□ 2.63
COL18A1P39060 AC142381.2-201ENST00000566120 298 ntBASIC31.48■■■□□ 2.63
COL18A1P39060 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.48■■■□□ 2.63
COL18A1P39060 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
COL18A1P39060 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL18A1P39060 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC31.47■■■□□ 2.63
COL18A1P39060 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC31.47■■■□□ 2.63
COL18A1P39060 AC096887.2-201ENST00000623443 1957 ntBASIC31.47■■■□□ 2.63
COL18A1P39060 AC090877.2-201ENST00000558441 1738 ntBASIC31.47■■■□□ 2.63
COL18A1P39060 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL18A1P39060 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL18A1P39060 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL18A1P39060 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
COL18A1P39060 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL18A1P39060 LBH-205ENST00000407930 756 ntTSL 2 BASIC31.45■■■□□ 2.63
COL18A1P39060 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC31.45■■■□□ 2.63
COL18A1P39060 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC31.45■■■□□ 2.63
COL18A1P39060 AL136162.1-201ENST00000607711 1078 ntBASIC31.45■■■□□ 2.63
COL18A1P39060 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC31.45■■■□□ 2.63
COL18A1P39060 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL18A1P39060 AC142086.6-201ENST00000621154 1765 ntBASIC31.45■■■□□ 2.63
COL18A1P39060 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.45■■■□□ 2.62
COL18A1P39060 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
COL18A1P39060 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
COL18A1P39060 AC024257.2-201ENST00000549699 147 ntBASIC31.45■■■□□ 2.62
COL18A1P39060 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC31.45■■■□□ 2.62
COL18A1P39060 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC31.44■■■□□ 2.62
COL18A1P39060 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC31.44■■■□□ 2.62
COL18A1P39060 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms