Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 CD72-202ENST00000378430 585 ntTSL 3 BASIC30.48■■■□□ 2.47
PTCD1O75127 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC30.48■■■□□ 2.47
PTCD1O75127 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.48■■■□□ 2.47
PTCD1O75127 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
PTCD1O75127 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
PTCD1O75127 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
PTCD1O75127 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
PTCD1O75127 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
PTCD1O75127 RASSF1-AS1-201ENST00000629828 790 ntBASIC30.47■■■□□ 2.47
PTCD1O75127 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
PTCD1O75127 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
PTCD1O75127 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
PTCD1O75127 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.46■■■□□ 2.47
PTCD1O75127 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
PTCD1O75127 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC30.46■■■□□ 2.47
PTCD1O75127 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC30.46■■■□□ 2.47
PTCD1O75127 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
PTCD1O75127 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
PTCD1O75127 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
PTCD1O75127 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC30.44■■■□□ 2.46
PTCD1O75127 AC005837.3-201ENST00000612163 286 ntBASIC30.44■■■□□ 2.46
PTCD1O75127 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
PTCD1O75127 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC30.44■■■□□ 2.46
PTCD1O75127 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
PTCD1O75127 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC30.43■■■□□ 2.46
PTCD1O75127 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
PTCD1O75127 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
PTCD1O75127 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
PTCD1O75127 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
PTCD1O75127 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC30.42■■■□□ 2.46
PTCD1O75127 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
PTCD1O75127 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
PTCD1O75127 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
PTCD1O75127 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
PTCD1O75127 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
PTCD1O75127 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
PTCD1O75127 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
PTCD1O75127 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30.39■■■□□ 2.46
PTCD1O75127 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC30.39■■■□□ 2.46
PTCD1O75127 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
PTCD1O75127 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
PTCD1O75127 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
PTCD1O75127 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
PTCD1O75127 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
PTCD1O75127 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
PTCD1O75127 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.37■■■□□ 2.45
PTCD1O75127 TFPT-201ENST00000391757 774 ntTSL 5 BASIC30.37■■■□□ 2.45
PTCD1O75127 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
PTCD1O75127 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC30.37■■■□□ 2.45
PTCD1O75127 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC30.37■■■□□ 2.45
PTCD1O75127 ERN1-208ENST00000606895 2068 ntBASIC30.36■■■□□ 2.45
PTCD1O75127 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30.36■■■□□ 2.45
PTCD1O75127 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30.36■■■□□ 2.45
PTCD1O75127 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC30.36■■■□□ 2.45
PTCD1O75127 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
PTCD1O75127 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
PTCD1O75127 SNX5-217ENST00000606557 1087 ntBASIC30.35■■■□□ 2.45
PTCD1O75127 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
PTCD1O75127 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
PTCD1O75127 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
PTCD1O75127 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
PTCD1O75127 AC090877.2-201ENST00000558441 1738 ntBASIC30.35■■■□□ 2.45
PTCD1O75127 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
PTCD1O75127 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
PTCD1O75127 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
PTCD1O75127 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
PTCD1O75127 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
PTCD1O75127 AC096887.2-201ENST00000623443 1957 ntBASIC30.34■■■□□ 2.45
PTCD1O75127 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
PTCD1O75127 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC30.33■■■□□ 2.45
PTCD1O75127 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
PTCD1O75127 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC30.33■■■□□ 2.45
PTCD1O75127 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
PTCD1O75127 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
PTCD1O75127 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC30.32■■■□□ 2.44
PTCD1O75127 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
PTCD1O75127 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.32■■■□□ 2.44
PTCD1O75127 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
PTCD1O75127 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
PTCD1O75127 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
PTCD1O75127 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
PTCD1O75127 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
PTCD1O75127 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC30.31■■■□□ 2.44
PTCD1O75127 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC30.31■■■□□ 2.44
PTCD1O75127 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
PTCD1O75127 PKM-203ENST00000389093 2279 ntTSL 5 BASIC30.3■■■□□ 2.44
PTCD1O75127 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
PTCD1O75127 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
PTCD1O75127 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
PTCD1O75127 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC30.29■■■□□ 2.44
PTCD1O75127 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC30.29■■■□□ 2.44
PTCD1O75127 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC30.29■■■□□ 2.44
PTCD1O75127 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
PTCD1O75127 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
PTCD1O75127 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
PTCD1O75127 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
PTCD1O75127 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC30.28■■■□□ 2.44
PTCD1O75127 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
PTCD1O75127 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
PTCD1O75127 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms