Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 KDELR2-202ENST00000382267 583 ntTSL 410.81□□□□□ -0.681e-12■□□□□ 10.5
LIN28BQ6ZN17 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC7.22□□□□□ -1.251e-12■□□□□ 10.5
LIN28BQ6ZN17 PGD-207ENST00000491493 806 ntTSL 519.5■□□□□ 0.718e-12■□□□□ 10.4
LIN28BQ6ZN17 PGD-204ENST00000477958 508 ntTSL 319.18■□□□□ 0.668e-12■□□□□ 10.4
LIN28BQ6ZN17 PGD-202ENST00000460189 767 ntTSL 215.49■□□□□ 0.078e-12■□□□□ 10.4
LIN28BQ6ZN17 PGD-203ENST00000465632 642 ntTSL 215.49■□□□□ 0.078e-12■□□□□ 10.4
LIN28BQ6ZN17 PSMD13-205ENST00000526783 892 ntTSL 512.3□□□□□ -0.442e-7■□□□□ 10.4
LIN28BQ6ZN17 HDGF-209ENST00000495212 744 ntTSL 322.88■■□□□ 1.252e-9■□□□□ 10.4
LIN28BQ6ZN17 HDGF-205ENST00000469145 844 ntTSL 221.4■■□□□ 1.022e-9■□□□□ 10.4
LIN28BQ6ZN17 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.981e-7■□□□□ 10.4
LIN28BQ6ZN17 EEF1D-249ENST00000533749 633 ntTSL 519.78■□□□□ 0.761e-7■□□□□ 10.4
LIN28BQ6ZN17 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.23■□□□□ 0.671e-7■□□□□ 10.4
LIN28BQ6ZN17 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.25■□□□□ 0.511e-7■□□□□ 10.4
LIN28BQ6ZN17 ALDH2-204ENST00000549106 580 ntTSL 317.94■□□□□ 0.461e-7■□□□□ 10.4
LIN28BQ6ZN17 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.351e-7■□□□□ 10.4
LIN28BQ6ZN17 EEF1D-251ENST00000534232 817 ntTSL 516.85■□□□□ 0.291e-7■□□□□ 10.4
LIN28BQ6ZN17 ALDH2-203ENST00000548536 1760 ntTSL 316.15■□□□□ 0.181e-7■□□□□ 10.4
LIN28BQ6ZN17 HDGF-202ENST00000368206 960 ntTSL 5 BASIC14.92□□□□□ -0.022e-9■□□□□ 10.4
LIN28BQ6ZN17 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.79□□□□□ -0.21e-7■□□□□ 10.4
LIN28BQ6ZN17 LMNA-206ENST00000368300 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.421e-7■□□□□ 10.4
LIN28BQ6ZN17 C4orf3-201ENST00000399075 2960 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.641e-7■□□□□ 10.4
LIN28BQ6ZN17 FST-204ENST00000497789 712 ntTSL 210.73□□□□□ -0.691e-7■□□□□ 10.4
LIN28BQ6ZN17 HDGF-206ENST00000471377 592 ntTSL 310.14□□□□□ -0.792e-9■□□□□ 10.4
LIN28BQ6ZN17 ALDH2-201ENST00000261733 9569 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.941e-7■□□□□ 10.4
LIN28BQ6ZN17 LRP6-206ENST00000543091 4774 ntTSL 1 (best) BASIC8.06□□□□□ -1.122e-6■□□□□ 10.4
LIN28BQ6ZN17 LRP6-203ENST00000538239 7812 ntTSL 1 (best)5.34□□□□□ -1.562e-6■□□□□ 10.4
LIN28BQ6ZN17 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.742e-6■□□□□ 10.4
LIN28BQ6ZN17 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.59■□□□□ 0.895e-10■□□□□ 10.4
LIN28BQ6ZN17 HINT1-202ENST00000504202 619 ntTSL 53.98□□□□□ -1.771e-7■□□□□ 10.4
LIN28BQ6ZN17 PARP1-206ENST00000469663 542 ntTSL 312.45□□□□□ -0.427e-7■□□□□ 10.4
LIN28BQ6ZN17 FCGRT-211ENST00000598076 676 ntTSL 315.23■□□□□ 0.034e-23■□□□□ 10.4
LIN28BQ6ZN17 TRIM28-210ENST00000597618 609 ntTSL 211.9□□□□□ -0.58e-10■□□□□ 10.4
LIN28BQ6ZN17 NCL-210ENST00000494618 910 ntTSL 25.3□□□□□ -1.562e-6■□□□□ 10.4
LIN28BQ6ZN17 LAMA5-203ENST00000370691 3160 ntTSL 1 (best)13.81□□□□□ -0.23e-6■□□□□ 10.4
LIN28BQ6ZN17 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.854e-6■□□□□ 10.4
LIN28BQ6ZN17 ABHD5-201ENST00000013894 833 ntTSL 320.26■□□□□ 0.834e-6■□□□□ 10.4
LIN28BQ6ZN17 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.333e-6■□□□□ 10.4
LIN28BQ6ZN17 ABHD5-204ENST00000456453 876 ntTSL 415.55■□□□□ 0.084e-6■□□□□ 10.4
LIN28BQ6ZN17 AZIN1-207ENST00000520402 660 ntTSL 415.12■□□□□ 0.016e-10■□□□□ 10.4
LIN28BQ6ZN17 AZIN1-206ENST00000518940 574 ntTSL 310.36□□□□□ -0.756e-10■□□□□ 10.4
LIN28BQ6ZN17 SMYD3-218ENST00000630181 1458 ntTSL 2 BASIC8.84□□□□□ -0.993e-6■□□□□ 10.4
LIN28BQ6ZN17 SMYD3-202ENST00000366517 1372 ntTSL 1 (best)8.56□□□□□ -1.043e-6■□□□□ 10.4
LIN28BQ6ZN17 SMYD3-201ENST00000366516 1863 ntTSL 1 (best)8.27□□□□□ -1.093e-6■□□□□ 10.4
LIN28BQ6ZN17 AZIN1-204ENST00000518353 773 ntTSL 58.1□□□□□ -1.116e-10■□□□□ 10.4
LIN28BQ6ZN17 SMYD3-209ENST00000470510 1042 ntTSL 57.39□□□□□ -1.233e-6■□□□□ 10.4
LIN28BQ6ZN17 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.243e-6■□□□□ 10.4
LIN28BQ6ZN17 MACF1-213ENST00000469490 842 ntTSL 54.23□□□□□ -1.733e-8■□□□□ 10.4
LIN28BQ6ZN17 HNRNPU-210ENST00000483966 1069 ntTSL 24.09□□□□□ -1.756e-10■□□□□ 10.4
LIN28BQ6ZN17 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.871e-30■□□□□ 10.4
LIN28BQ6ZN17 AC051619.7-201ENST00000568314 623 ntBASIC18.57■□□□□ 0.561e-10■□□□□ 10.4
LIN28BQ6ZN17 SHF-211ENST00000561278 578 ntTSL 414.28□□□□□ -0.121e-10■□□□□ 10.4
LIN28BQ6ZN17 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.492e-13■□□□□ 10.4
LIN28BQ6ZN17 AP005263.1-202ENST00000578850 198 ntTSL 221.61■■□□□ 1.052e-13■□□□□ 10.4
LIN28BQ6ZN17 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.61■■□□□ 1.052e-13■□□□□ 10.4
LIN28BQ6ZN17 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC8.15□□□□□ -1.12e-13■□□□□ 10.4
LIN28BQ6ZN17 NDUFV2-203ENST00000465096 643 ntTSL 25.92□□□□□ -1.462e-13■□□□□ 10.4
LIN28BQ6ZN17 NDUFV2-205ENST00000474740 264 ntTSL 22.94□□□□□ -1.942e-13■□□□□ 10.4
LIN28BQ6ZN17 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.146e-7■□□□□ 10.4
LIN28BQ6ZN17 PIN4-204ENST00000423432 1605 ntTSL 2 BASIC10.1□□□□□ -0.796e-7■□□□□ 10.4
LIN28BQ6ZN17 PIN4-201ENST00000218432 1780 ntTSL 2 BASIC9.63□□□□□ -0.876e-7■□□□□ 10.4
LIN28BQ6ZN17 PIN4-207ENST00000496835 678 ntTSL 29.36□□□□□ -0.916e-7■□□□□ 10.4
LIN28BQ6ZN17 PIN4-205ENST00000439980 577 ntTSL 47.95□□□□□ -1.146e-7■□□□□ 10.4
LIN28BQ6ZN17 PRDX4-205ENST00000495599 632 ntTSL 319.61■□□□□ 0.733e-9■□□□□ 10.4
LIN28BQ6ZN17 PRDX4-203ENST00000379349 815 ntTSL 314.1□□□□□ -0.153e-9■□□□□ 10.4
LIN28BQ6ZN17 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.033e-7■□□□□ 10.3
LIN28BQ6ZN17 EHBP1L1-211ENST00000634639 1643 ntTSL 527.01■■□□□ 1.921e-7■□□□□ 10.3
LIN28BQ6ZN17 YWHAH-204ENST00000443669 822 ntTSL 325.97■■□□□ 1.751e-7■□□□□ 10.3
LIN28BQ6ZN17 EHBP1L1-208ENST00000533237 2267 ntTSL 525.85■■□□□ 1.731e-7■□□□□ 10.3
LIN28BQ6ZN17 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.641e-7■□□□□ 10.3
LIN28BQ6ZN17 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.79■■□□□ 1.561e-7■□□□□ 10.3
LIN28BQ6ZN17 EHBP1L1-210ENST00000533465 793 ntTSL 321.77■■□□□ 1.081e-7■□□□□ 10.3
LIN28BQ6ZN17 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.011e-7■□□□□ 10.3
LIN28BQ6ZN17 YWHAH-205ENST00000471374 1735 ntTSL 220.56■□□□□ 0.881e-7■□□□□ 10.3
LIN28BQ6ZN17 ACAA1-215ENST00000469600 876 ntTSL 216.26■□□□□ 0.191e-7■□□□□ 10.3
LIN28BQ6ZN17 CKB-211ENST00000555039 270 ntTSL 515.6■□□□□ 0.091e-7■□□□□ 10.3
LIN28BQ6ZN17 ACAA1-211ENST00000452171 927 ntTSL 314.08□□□□□ -0.161e-7■□□□□ 10.3
LIN28BQ6ZN17 YWHAH-206ENST00000479649 662 ntTSL 312.85□□□□□ -0.351e-7■□□□□ 10.3
LIN28BQ6ZN17 EHBP1L1-202ENST00000526990 3169 nt12.65□□□□□ -0.381e-7■□□□□ 10.3
LIN28BQ6ZN17 UQCRC2-201ENST00000268379 2615 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.741e-7■□□□□ 10.3
LIN28BQ6ZN17 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC9.55□□□□□ -0.881e-7■□□□□ 10.3
LIN28BQ6ZN17 QARS-220ENST00000487495 451 ntTSL 38.04□□□□□ -1.121e-7■□□□□ 10.3
LIN28BQ6ZN17 UQCRC2-204ENST00000563711 2008 ntTSL 28□□□□□ -1.131e-7■□□□□ 10.3
LIN28BQ6ZN17 UQCRC2-205ENST00000563898 1406 ntTSL 57.93□□□□□ -1.141e-7■□□□□ 10.3
LIN28BQ6ZN17 UQCRC2-211ENST00000567810 582 ntTSL 37.4□□□□□ -1.221e-7■□□□□ 10.3
LIN28BQ6ZN17 VRK1-203ENST00000555067 604 ntTSL 35.3□□□□□ -1.561e-11■□□□□ 10.3
LIN28BQ6ZN17 VRK1-205ENST00000555402 415 ntTSL 34.97□□□□□ -1.611e-11■□□□□ 10.3
LIN28BQ6ZN17 YWHAH-203ENST00000420430 502 ntTSL 23.33□□□□□ -1.881e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.2■□□□□ 0.52e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.6■□□□□ 0.252e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.182e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-210ENST00000448850 1846 ntTSL 1 (best)15.71■□□□□ 0.12e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.83□□□□□ -0.042e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.65□□□□□ -0.222e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-201ENST00000346798 3467 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.582e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-209ENST00000440126 2846 ntTSL 2 BASIC8□□□□□ -1.132e-7■□□□□ 10.3
LIN28BQ6ZN17 APP-206ENST00000359726 3294 ntTSL 2 BASIC6.52□□□□□ -1.372e-7■□□□□ 10.3
LIN28BQ6ZN17 SURF4-204ENST00000465565 400 ntTSL 322.14■■□□□ 1.132e-6■□□□□ 10.3
LIN28BQ6ZN17 FN1-218ENST00000473614 568 ntTSL 27.46□□□□□ -1.226e-56■□□□□ 10.3
LIN28BQ6ZN17 HNRNPK-203ENST00000376256 562 ntTSL 25.52□□□□□ -1.532e-8■□□□□ 10.3
LIN28BQ6ZN17 VARS-228ENST00000495010 1007 ntTSL 516.59■□□□□ 0.252e-6■□□□□ 10.3
Retrieved 100 of 21,972 protein–RNA pairs in 452.8 ms