RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 AEBP2Q6ZN18 517 aaPredicted RBP36.63■■■■□ 3.45
VRK1-205ENST00000555402 CHIC1Q5VXU3 224 aa34.54■■■■□ 3.12
VRK1-205ENST00000555402 SENP3Q9H4L4 574 aaPredicted RBP31.26■■■□□ 2.59
VRK1-205ENST00000555402 PHF23Q9BUL5 403 aaPredicted RBP30.85■■■□□ 2.53
VRK1-205ENST00000555402 FOXD1Q16676 465 aa29.18■■■□□ 2.26
VRK1-205ENST00000555402 PLPPR3Q6T4P5 718 aa27.49■■□□□ 1.99
VRK1-205ENST00000555402 MSH5O43196 834 aa27.4■■□□□ 1.98
VRK1-205ENST00000555402 PIAS4Q8N2W9 510 aaPredicted RBP27.2■■□□□ 1.94
VRK1-205ENST00000555402 POTEDQ86YR6 584 aa27.15■■□□□ 1.94
VRK1-205ENST00000555402 PPP6R1Q9UPN7 881 aa27.12■■□□□ 1.93
VRK1-205ENST00000555402 ADRA2BP18089 450 aa27.01■■□□□ 1.91
VRK1-205ENST00000555402 MAPK8IP2Q13387 824 aaPredicted RBP24.9■■□□□ 1.58
VRK1-205ENST00000555402 DMRT2Q9Y5R5 561 aa24.76■■□□□ 1.55
VRK1-205ENST00000555402 SCAF1Q9H7N4 1312 aaKnown RBP24.72■■□□□ 1.55
VRK1-205ENST00000555402 PPP4R3CPQ6ZMV5 832 aa24.07■■□□□ 1.44
VRK1-205ENST00000555402 DCAF8L1A6NGE4 600 aa23.76■■□□□ 1.39
VRK1-205ENST00000555402 HOXD11P31277 338 aaPredicted RBP23.76■■□□□ 1.39
VRK1-205ENST00000555402 CNKSR2Q8WXI2 1034 aa23.68■■□□□ 1.38
VRK1-205ENST00000555402 CACNB1Q02641 598 aaPredicted RBP23.66■■□□□ 1.38
VRK1-205ENST00000555402 RNF216Q9NWF9 866 aaPredicted RBP23.53■■□□□ 1.36
VRK1-205ENST00000555402 RNF39Q9H2S5 420 aa23.36■■□□□ 1.33
VRK1-205ENST00000555402 NCBP3Q53F19 620 aaKnown RBP23.07■■□□□ 1.28
VRK1-205ENST00000555402 C1QBPQ07021 282 aaKnown RBP23.01■■□□□ 1.27
VRK1-205ENST00000555402 DNAJC5BQ9UF47 199 aa22.99■■□□□ 1.27
VRK1-205ENST00000555402 NPM3O75607 178 aaKnown RBP22.74■■□□□ 1.23
VRK1-205ENST00000555402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.65■■□□□ 1.22
VRK1-205ENST00000555402 U3KPZ7 1027 aaPredicted RBP22.14■■□□□ 1.13
VRK1-205ENST00000555402 KCNA4P22459 653 aa22.09■■□□□ 1.13
VRK1-205ENST00000555402 SPINK5Q9NQ38 1064 aaPredicted RBP21.89■■□□□ 1.09
VRK1-205ENST00000555402 CAPN15O75808 1086 aa21.87■■□□□ 1.09
VRK1-205ENST00000555402 DSG3P32926 999 aa21.8■■□□□ 1.08
VRK1-205ENST00000555402 SLC4A2P04920 1241 aa21.79■■□□□ 1.08
VRK1-205ENST00000555402 APLP2Q06481 763 aa21.48■■□□□ 1.03
VRK1-205ENST00000555402 TRHP20396 242 aaPredicted RBP21.47■■□□□ 1.03
VRK1-205ENST00000555402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.42■■□□□ 1.02
VRK1-205ENST00000555402 HNRNPUL2Q1KMD3 747 aaKnown RBP21.42■■□□□ 1.02
VRK1-205ENST00000555402 ZNF219Q9P2Y4 722 aaPredicted RBP21.4■■□□□ 1.02
VRK1-205ENST00000555402 ABCB7O75027 752 aa21.34■■□□□ 1.01
VRK1-205ENST00000555402 SAMD1Q6SPF0 538 aaPredicted RBP21.29■■□□□ 1
VRK1-205ENST00000555402 POTEHQ6S545 545 aa21.23■□□□□ 0.99
VRK1-205ENST00000555402 MYCNP04198 464 aaPredicted RBP21.02■□□□□ 0.96
VRK1-205ENST00000555402 POLA2Q14181 598 aa20.84■□□□□ 0.93
VRK1-205ENST00000555402 SLC4A1APQ9BWU0 796 aaKnown RBP20.8■□□□□ 0.92
VRK1-205ENST00000555402 RBM42Q9BTD8 480 aaKnown RBP20.78■□□□□ 0.92
VRK1-205ENST00000555402 FOXD4L1Q9NU39 408 aa20.68■□□□□ 0.9
VRK1-205ENST00000555402 ATF5Q9Y2D1 282 aaPredicted RBP20.59■□□□□ 0.89
VRK1-205ENST00000555402 CHRDL2Q6WN34 429 aa20.43■□□□□ 0.86
VRK1-205ENST00000555402 ZBTB12Q9Y330 459 aaPredicted RBP20.36■□□□□ 0.85
VRK1-205ENST00000555402 ZBTB22O15209 634 aa20.31■□□□□ 0.84
VRK1-205ENST00000555402 AKT1S1Q96B36 256 aa20.27■□□□□ 0.84
VRK1-205ENST00000555402 OSCARQ8IYS5 282 aa20.16■□□□□ 0.82
VRK1-205ENST00000555402 REM2Q8IYK8 340 aaPredicted RBP20.09■□□□□ 0.81
VRK1-205ENST00000555402 ATXN8OSP0DMR3 200 aa20.08■□□□□ 0.81
VRK1-205ENST00000555402 PIP4P2Q8N4L2 257 aa19.91■□□□□ 0.78
VRK1-205ENST00000555402 PITPNM1O00562 1244 aa19.87■□□□□ 0.77
VRK1-205ENST00000555402 SP7Q8TDD2 431 aaPredicted RBP19.79■□□□□ 0.76
VRK1-205ENST00000555402 FBLN2P98095 1184 aa19.78■□□□□ 0.76
VRK1-205ENST00000555402 FXR2P51116 673 aaKnown RBP eCLIP19.76■□□□□ 0.75
VRK1-205ENST00000555402 SPDYE2BA6NHP3 402 aa19.73■□□□□ 0.75
VRK1-205ENST00000555402 SPDYE6P0CI01 402 aa19.73■□□□□ 0.75
VRK1-205ENST00000555402 SPDYE2Q495Y8 402 aa19.73■□□□□ 0.75
VRK1-205ENST00000555402 HAX1O00165 279 aa19.62■□□□□ 0.73
VRK1-205ENST00000555402 MKRN4PQ13434 485 aaPredicted RBP19.61■□□□□ 0.73
VRK1-205ENST00000555402 ZNF692Q9BU19 519 aaPredicted RBP19.48■□□□□ 0.71
VRK1-205ENST00000555402 SPDYE1Q8NFV5 336 aaPredicted RBP19.44■□□□□ 0.7
VRK1-205ENST00000555402 CLEC11AQ9Y240 323 aa19.44■□□□□ 0.7
VRK1-205ENST00000555402 SSUH2Q9Y2M2 353 aa19.44■□□□□ 0.7
VRK1-205ENST00000555402 EVX2Q03828 476 aa19.37■□□□□ 0.69
VRK1-205ENST00000555402 PRKAR2AP13861 404 aaKnown RBP19.36■□□□□ 0.69
VRK1-205ENST00000555402 PABPN1Q86U42 306 aaKnown RBP eCLIP19.17■□□□□ 0.66
VRK1-205ENST00000555402 CSRNP3Q8WYN3 585 aa19.17■□□□□ 0.66
VRK1-205ENST00000555402 C19orf67A6NJJ6 358 aa19.13■□□□□ 0.65
VRK1-205ENST00000555402 CHADLQ6NUI6 762 aa19.1■□□□□ 0.65
VRK1-205ENST00000555402 PRR29P0C7W0 189 aa19.09■□□□□ 0.65
VRK1-205ENST00000555402 GABBR2O75899 941 aa18.92■□□□□ 0.62
VRK1-205ENST00000555402 FARP1Q9Y4F1 1045 aaPredicted RBP18.79■□□□□ 0.6
VRK1-205ENST00000555402 EHMT2Q96KQ7 1210 aa18.77■□□□□ 0.6
VRK1-205ENST00000555402 CD44P16070 742 aaKnown RBP18.72■□□□□ 0.59
VRK1-205ENST00000555402 STAG3Q9UJ98 1225 aa18.6■□□□□ 0.57
VRK1-205ENST00000555402 SPDYE4A6NLX3 237 aa18.57■□□□□ 0.56
VRK1-205ENST00000555402 LHX8Q68G74 356 aa18.57■□□□□ 0.56
VRK1-205ENST00000555402 CREBZFQ9NS37 354 aa18.56■□□□□ 0.56
VRK1-205ENST00000555402 CLCN6P51797 869 aa18.53■□□□□ 0.56
VRK1-205ENST00000555402 POTEIP0CG38 1075 aa18.51■□□□□ 0.55
VRK1-205ENST00000555402 ZRANB1Q9UGI0 708 aa18.44■□□□□ 0.54
VRK1-205ENST00000555402 ZNF579Q8NAF0 562 aaKnown RBP18.42■□□□□ 0.54
VRK1-205ENST00000555402 DCBLD2Q96PD2 775 aa18.35■□□□□ 0.53
VRK1-205ENST00000555402 GALR2O43603 387 aaPredicted RBP18.22■□□□□ 0.51
VRK1-205ENST00000555402 PAK3O75914 559 aaPredicted RBP18.22■□□□□ 0.51
VRK1-205ENST00000555402 NPM1P06748 294 aaKnown RBP eCLIP18.21■□□□□ 0.51
VRK1-205ENST00000555402 MNX1P50219 401 aaPredicted RBP18.2■□□□□ 0.5
VRK1-205ENST00000555402 PHF12Q96QT6 1004 aa18.15■□□□□ 0.5
VRK1-205ENST00000555402 PROM2Q8N271 834 aa18.07■□□□□ 0.48
VRK1-205ENST00000555402 PELP1Q8IZL8 1130 aaKnown RBP17.91■□□□□ 0.46
VRK1-205ENST00000555402 POTEB2H3BUK9 544 aa17.9■□□□□ 0.46
VRK1-205ENST00000555402 MS4A3Q96HJ5 214 aa17.89■□□□□ 0.45
VRK1-205ENST00000555402 OTUD5Q96G74 571 aa17.88■□□□□ 0.45
VRK1-205ENST00000555402 TSPYL2Q9H2G4 693 aaPredicted RBP17.87■□□□□ 0.45
VRK1-205ENST00000555402 ASTLQ6HA08 431 aaPredicted RBP17.83■□□□□ 0.44
VRK1-205ENST00000555402 CCDC61Q9Y6R9 512 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 303.2 ms