RNA–Protein interactions for RNA: ENST00000448611.6

LMNA-208, Transcript of lamin A/C, humanhuman

TSL 2 BASIC

Gene LMNA, Length 1,943 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-208ENST00000448611 NISCHQ9Y2I1 1504 aa39.48■■■■□ 3.91
LMNA-208ENST00000448611 CCDC180Q9P1Z9 1646 aa34.24■■■■□ 3.07
LMNA-208ENST00000448611 ZCCHC6Q5VYS8 1495 aaKnown RBP33.24■■■□□ 2.91
LMNA-208ENST00000448611 ABCC9O60706 1549 aa32.86■■■□□ 2.85
LMNA-208ENST00000448611 DCAF1Q9Y4B6 1507 aa32.63■■■□□ 2.81
LMNA-208ENST00000448611 DCAF8L2P0C7V8 631 aa32.51■■■□□ 2.79
LMNA-208ENST00000448611 SHROOM4Q9ULL8 1493 aa32.46■■■□□ 2.79
LMNA-208ENST00000448611 MYO15BQ96JP2 1530 aa32.12■■■□□ 2.73
LMNA-208ENST00000448611 NACADO15069 1562 aa31.89■■■□□ 2.7
LMNA-208ENST00000448611 RB1CC1Q8TDY2 1594 aa31.8■■■□□ 2.68
LMNA-208ENST00000448611 SCRIBQ14160 1630 aa31.58■■■□□ 2.65
LMNA-208ENST00000448611 SUPT5HO00267 1087 aaKnown RBP31.37■■■□□ 2.61
LMNA-208ENST00000448611 UNC13AQ9UPW8 1703 aa31.1■■■□□ 2.57
LMNA-208ENST00000448611 PABPN1Q86U42 306 aaKnown RBP eCLIP30.86■■■□□ 2.531e-8■□□□□ 9.4
LMNA-208ENST00000448611 BICRAQ9NZM4 1560 aa30.81■■■□□ 2.52
LMNA-208ENST00000448611 RSF1Q96T23 1441 aaPredicted RBP30.77■■■□□ 2.52
LMNA-208ENST00000448611 CECR2Q9BXF3 1484 aa30.7■■■□□ 2.5
LMNA-208ENST00000448611 MROH2BQ7Z745 1585 aa30.54■■■□□ 2.48
LMNA-208ENST00000448611 BAZ1AQ9NRL2 1556 aaPredicted RBP30.44■■■□□ 2.46
LMNA-208ENST00000448611 WIZO95785 1651 aa30.3■■■□□ 2.44
LMNA-208ENST00000448611 SMARCA4P51532 1647 aa30.28■■■□□ 2.44
LMNA-208ENST00000448611 CHIC1Q5VXU3 224 aa30.22■■■□□ 2.43
LMNA-208ENST00000448611 EIF4G1Q04637 1599 aaKnown RBP29.98■■■□□ 2.39
LMNA-208ENST00000448611 TOP2AP11388 1531 aaKnown RBP29.97■■■□□ 2.39
LMNA-208ENST00000448611 PEG3Q9GZU2 1588 aa29.9■■■□□ 2.38
LMNA-208ENST00000448611 ATAD2BQ9ULI0 1458 aa29.72■■■□□ 2.35
LMNA-208ENST00000448611 SMARCA2P51531 1590 aa29.72■■■□□ 2.35
LMNA-208ENST00000448611 CC2D2AQ9P2K1 1620 aa29.71■■■□□ 2.35
LMNA-208ENST00000448611 CCDC88BA6NC98 1476 aa29.7■■■□□ 2.34
LMNA-208ENST00000448611 DNAJC5BQ9UF47 199 aa29.61■■■□□ 2.33
LMNA-208ENST00000448611 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
LMNA-208ENST00000448611 TRIM41Q8WV44 630 aa29.46■■■□□ 2.31
LMNA-208ENST00000448611 NCAPD3P42695 1498 aa29.43■■■□□ 2.3
LMNA-208ENST00000448611 HMGXB3Q12766 1538 aa29.37■■■□□ 2.29
LMNA-208ENST00000448611 ABCC8Q09428 1581 aa29.18■■■□□ 2.26
LMNA-208ENST00000448611 LOC105371045A0A1W2PR82 267 aa29.08■■■□□ 2.25
LMNA-208ENST00000448611 FAM9AQ8IZU1 332 aaPredicted RBP28.95■■■□□ 2.23
LMNA-208ENST00000448611 WRNQ14191 1432 aaPredicted RBP eCLIP28.94■■■□□ 2.225e-6■■■■□ 20.9
LMNA-208ENST00000448611 CFTRP13569 1480 aa28.84■■■□□ 2.21
LMNA-208ENST00000448611 SYNJ1O43426 1573 aa28.82■■■□□ 2.2
LMNA-208ENST00000448611 SOGA1O94964 1423 aa28.71■■■□□ 2.19
LMNA-208ENST00000448611 CADPSQ9ULU8 1353 aa28.68■■■□□ 2.18
LMNA-208ENST00000448611 TOP2BQ02880 1626 aa28.66■■■□□ 2.18
LMNA-208ENST00000448611 EEA1Q15075 1411 aa28.66■■■□□ 2.18
LMNA-208ENST00000448611 PRDM2Q13029 1718 aa28.66■■■□□ 2.18
LMNA-208ENST00000448611 NESP48681 1621 aa28.62■■■□□ 2.17
LMNA-208ENST00000448611 BIVM-ERCC5R4GMW8 1640 aa28.62■■■□□ 2.17
LMNA-208ENST00000448611 RUSC2Q8N2Y8 1516 aa28.6■■■□□ 2.17
LMNA-208ENST00000448611 LAMC3Q9Y6N6 1575 aa28.56■■■□□ 2.16
LMNA-208ENST00000448611 EHMT2Q96KQ7 1210 aa28.55■■■□□ 2.16
LMNA-208ENST00000448611 CUX1P39880 1505 aa28.53■■■□□ 2.16
LMNA-208ENST00000448611 CSRNP3Q8WYN3 585 aa28.5■■■□□ 2.15
LMNA-208ENST00000448611 PDS5BQ9NTI5 1447 aa28.37■■■□□ 2.13
LMNA-208ENST00000448611 FANCD2Q9BXW9 1451 aa28.36■■■□□ 2.13
LMNA-208ENST00000448611 GOLGA3Q08378 1498 aa28.29■■■□□ 2.12
LMNA-208ENST00000448611 KIF21BO75037 1637 aa28.29■■■□□ 2.12
LMNA-208ENST00000448611 ERCC6Q03468 1493 aa28.28■■■□□ 2.12
LMNA-208ENST00000448611 TNIKQ9UKE5 1360 aa28.28■■■□□ 2.12
LMNA-208ENST00000448611 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
LMNA-208ENST00000448611 KIF21AQ7Z4S6 1674 aa28.26■■■□□ 2.12
LMNA-208ENST00000448611 KIF27Q86VH2 1401 aa28.16■■■□□ 2.1
LMNA-208ENST00000448611 FGD5Q6ZNL6 1462 aa28.16■■■□□ 2.1
LMNA-208ENST00000448611 CEP162Q5TB80 1403 aa28.16■■■□□ 2.1
LMNA-208ENST00000448611 UBTFP17480 764 aaKnown RBP28.15■■■□□ 2.1
LMNA-208ENST00000448611 DNMBPQ6XZF7 1577 aa28.15■■■□□ 2.1
LMNA-208ENST00000448611 RAPGEF2Q9Y4G8 1499 aa28.1■■■□□ 2.09
LMNA-208ENST00000448611 TOPBP1Q92547 1522 aa28.09■■■□□ 2.09
LMNA-208ENST00000448611 PRXQ9BXM0 1461 aa28.08■■■□□ 2.09
LMNA-208ENST00000448611 PCGF6Q9BYE7 350 aa28.06■■■□□ 2.08
LMNA-208ENST00000448611 ERICH3Q5RHP9 1530 aa28.04■■■□□ 2.08
LMNA-208ENST00000448611 CUX2O14529 1486 aa28.03■■■□□ 2.08
LMNA-208ENST00000448611 MRC2Q9UBG0 1479 aa28.03■■■□□ 2.08
LMNA-208ENST00000448611 URB2Q14146 1524 aaKnown RBP28■■■□□ 2.07
LMNA-208ENST00000448611 POLA1P09884 1462 aaPredicted RBP27.98■■■□□ 2.07
LMNA-208ENST00000448611 THOC2Q8NI27 1593 aaKnown RBP27.97■■■□□ 2.07
LMNA-208ENST00000448611 TRIM26Q12899 539 aaPredicted RBP27.96■■■□□ 2.07
LMNA-208ENST00000448611 ABCA10Q8WWZ4 1543 aa27.91■■■□□ 2.06
LMNA-208ENST00000448611 IGF1RP08069 1367 aa27.91■■■□□ 2.06
LMNA-208ENST00000448611 WDR62O43379 1518 aa27.91■■■□□ 2.06
LMNA-208ENST00000448611 RAD54L2Q9Y4B4 1467 aa27.91■■■□□ 2.06
LMNA-208ENST00000448611 CLIP1P30622 1438 aa27.86■■■□□ 2.05
LMNA-208ENST00000448611 WDR97A6NE52 1622 aa27.78■■■□□ 2.04
LMNA-208ENST00000448611 CARMIL1Q5VZK9 1371 aa27.76■■■□□ 2.03
LMNA-208ENST00000448611 PPARGC1BQ86YN6 1023 aaKnown RBP27.69■■■□□ 2.02
LMNA-208ENST00000448611 VPS8Q8N3P4 1428 aa27.67■■■□□ 2.02
LMNA-208ENST00000448611 ABCA5Q8WWZ7 1642 aa27.66■■■□□ 2.02
LMNA-208ENST00000448611 TARBP1Q13395 1621 aaKnown RBP27.65■■■□□ 2.02
LMNA-208ENST00000448611 RANGAP1P46060 587 aaPredicted RBP27.63■■■□□ 2.01
LMNA-208ENST00000448611 CUL7Q14999 1698 aa27.62■■■□□ 2.01
LMNA-208ENST00000448611 TDRD9Q8NDG6 1382 aaKnown RBP27.61■■■□□ 2.01
LMNA-208ENST00000448611 GAPVD1Q14C86 1478 aa27.58■■■□□ 2.01
LMNA-208ENST00000448611 ARAP1Q96P48 1450 aa27.58■■■□□ 2.01
LMNA-208ENST00000448611 IFT140Q96RY7 1462 aa27.58■■■□□ 2.01
LMNA-208ENST00000448611 HRCP23327 699 aa27.51■■■□□ 2
LMNA-208ENST00000448611 ARHGAP35Q9NRY4 1499 aa27.51■■□□□ 1.99
LMNA-208ENST00000448611 ZNF608Q9ULD9 1512 aaPredicted RBP27.46■■□□□ 1.99
LMNA-208ENST00000448611 AQRO60306 1485 aaKnown RBP eCLIP27.4■■□□□ 1.981e-7■■■■■ 36.5
LMNA-208ENST00000448611 TTBK1Q5TCY1 1321 aaPredicted RBP27.39■■□□□ 1.97
LMNA-208ENST00000448611 PBRM1Q86U86 1689 aa27.38■■□□□ 1.97
LMNA-208ENST00000448611 CTTNBP2Q8WZ74 1663 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms