RNA–Protein interactions for RNA: ENST00000440126.7

APP-209, Transcript of amyloid beta precursor protein, humanhuman

TSL 2 BASIC

Gene APP, Length 2,846 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-209ENST00000440126 NISCHQ9Y2I1 1504 aa16.77■□□□□ 0.27
APP-209ENST00000440126 SHROOM4Q9ULL8 1493 aa14.48□□□□□ -0.09
APP-209ENST00000440126 DCAF8L2P0C7V8 631 aa14.35□□□□□ -0.11
APP-209ENST00000440126 CCDC180Q9P1Z9 1646 aa14.24□□□□□ -0.13
APP-209ENST00000440126 ZCCHC6Q5VYS8 1495 aaKnown RBP14.11□□□□□ -0.15
APP-209ENST00000440126 SUPT5HO00267 1087 aaKnown RBP14.06□□□□□ -0.16
APP-209ENST00000440126 ABCC9O60706 1549 aa13.71□□□□□ -0.21
APP-209ENST00000440126 DCAF1Q9Y4B6 1507 aa13.58□□□□□ -0.23
APP-209ENST00000440126 SCRIBQ14160 1630 aa13.56□□□□□ -0.24
APP-209ENST00000440126 CHIC1Q5VXU3 224 aa13.4□□□□□ -0.26
APP-209ENST00000440126 MYO15BQ96JP2 1530 aa13.34□□□□□ -0.27
APP-209ENST00000440126 NACADO15069 1562 aa13.26□□□□□ -0.29
APP-209ENST00000440126 RSF1Q96T23 1441 aaPredicted RBP13.24□□□□□ -0.29
APP-209ENST00000440126 CECR2Q9BXF3 1484 aa13.23□□□□□ -0.29
APP-209ENST00000440126 PABPN1Q86U42 306 aaKnown RBP eCLIP13.15□□□□□ -0.3
APP-209ENST00000440126 RB1CC1Q8TDY2 1594 aa13.14□□□□□ -0.31
APP-209ENST00000440126 LOC105371045A0A1W2PR82 267 aa13.14□□□□□ -0.31
APP-209ENST00000440126 MROH2BQ7Z745 1585 aa13.11□□□□□ -0.31
APP-209ENST00000440126 EHMT2Q96KQ7 1210 aa13.11□□□□□ -0.31
APP-209ENST00000440126 FAM9AQ8IZU1 332 aaPredicted RBP13.07□□□□□ -0.32
APP-209ENST00000440126 WIZO95785 1651 aa13.05□□□□□ -0.32
APP-209ENST00000440126 PELP1Q8IZL8 1130 aaKnown RBP13.04□□□□□ -0.32
APP-209ENST00000440126 UNC13AQ9UPW8 1703 aa13□□□□□ -0.33
APP-209ENST00000440126 TRIM41Q8WV44 630 aa12.99□□□□□ -0.33
APP-209ENST00000440126 BAZ1AQ9NRL2 1556 aaPredicted RBP12.87□□□□□ -0.35
APP-209ENST00000440126 PCGF6Q9BYE7 350 aa12.87□□□□□ -0.35
APP-209ENST00000440126 BICRAQ9NZM4 1560 aa12.84□□□□□ -0.35
APP-209ENST00000440126 SMARCA4P51532 1647 aa12.83□□□□□ -0.36
APP-209ENST00000440126 MYT1Q01538 1121 aa12.77□□□□□ -0.36
APP-209ENST00000440126 CCDC88BA6NC98 1476 aa12.75□□□□□ -0.37
APP-209ENST00000440126 ABCC8Q09428 1581 aa12.73□□□□□ -0.37
APP-209ENST00000440126 TOP2AP11388 1531 aaKnown RBP12.72□□□□□ -0.37
APP-209ENST00000440126 PPARGC1BQ86YN6 1023 aaKnown RBP12.7□□□□□ -0.38
APP-209ENST00000440126 SMARCA2P51531 1590 aa12.69□□□□□ -0.38
APP-209ENST00000440126 EIF4G1Q04637 1599 aaKnown RBP12.63□□□□□ -0.39
APP-209ENST00000440126 TTBK1Q5TCY1 1321 aaPredicted RBP12.59□□□□□ -0.39
APP-209ENST00000440126 ATAD2BQ9ULI0 1458 aa12.58□□□□□ -0.4
APP-209ENST00000440126 SOGA1O94964 1423 aa12.55□□□□□ -0.4
APP-209ENST00000440126 BAZ1BQ9UIG0 1483 aaKnown RBP12.55□□□□□ -0.4
APP-209ENST00000440126 HRCP23327 699 aa12.55□□□□□ -0.4
APP-209ENST00000440126 RUSC2Q8N2Y8 1516 aa12.54□□□□□ -0.4
APP-209ENST00000440126 TRIM26Q12899 539 aaPredicted RBP12.5□□□□□ -0.41
APP-209ENST00000440126 RANGAP1P46060 587 aaPredicted RBP12.48□□□□□ -0.41
APP-209ENST00000440126 PEG3Q9GZU2 1588 aa12.46□□□□□ -0.41
APP-209ENST00000440126 UBTFP17480 764 aaKnown RBP12.46□□□□□ -0.42
APP-209ENST00000440126 WRNQ14191 1432 aaPredicted RBP eCLIP12.45□□□□□ -0.42
APP-209ENST00000440126 SYNJ1O43426 1573 aa12.41□□□□□ -0.42
APP-209ENST00000440126 CSRNP3Q8WYN3 585 aa12.41□□□□□ -0.42
APP-209ENST00000440126 PRKCSHP14314 528 aaPredicted RBP12.33□□□□□ -0.44
APP-209ENST00000440126 CEP162Q5TB80 1403 aa12.33□□□□□ -0.44
APP-209ENST00000440126 NCAPD3P42695 1498 aa12.3□□□□□ -0.44
APP-209ENST00000440126 TNIKQ9UKE5 1360 aa12.24□□□□□ -0.45
APP-209ENST00000440126 HMGXB3Q12766 1538 aa12.24□□□□□ -0.45
APP-209ENST00000440126 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.24□□□□□ -0.45
APP-209ENST00000440126 DNAJC5BQ9UF47 199 aa12.24□□□□□ -0.45
APP-209ENST00000440126 GOLGA3Q08378 1498 aa12.23□□□□□ -0.45
APP-209ENST00000440126 CC2D2AQ9P2K1 1620 aa12.23□□□□□ -0.45
APP-209ENST00000440126 RAPGEF2Q9Y4G8 1499 aa12.23□□□□□ -0.45
APP-209ENST00000440126 EEA1Q15075 1411 aa12.21□□□□□ -0.45
APP-209ENST00000440126 CUX1P39880 1505 aa12.2□□□□□ -0.46
APP-209ENST00000440126 TOP2BQ02880 1626 aa12.19□□□□□ -0.46
APP-209ENST00000440126 CFTRP13569 1480 aa12.17□□□□□ -0.46
APP-209ENST00000440126 CEP164Q9UPV0 1460 aa12.17□□□□□ -0.46
APP-209ENST00000440126 CLIP1P30622 1438 aa12.15□□□□□ -0.46
APP-209ENST00000440126 NESP48681 1621 aa12.14□□□□□ -0.47
APP-209ENST00000440126 CCER1Q8TC90 406 aaPredicted RBP12.12□□□□□ -0.47
APP-209ENST00000440126 CADPSQ9ULU8 1353 aa12.12□□□□□ -0.47
APP-209ENST00000440126 BIVM-ERCC5R4GMW8 1640 aa12.11□□□□□ -0.47
APP-209ENST00000440126 HNRNPUL2Q1KMD3 747 aaKnown RBP12.1□□□□□ -0.47
APP-209ENST00000440126 KIF21BO75037 1637 aa12.1□□□□□ -0.47
APP-209ENST00000440126 SCAF1Q9H7N4 1312 aaKnown RBP12.09□□□□□ -0.47
APP-209ENST00000440126 CUX2O14529 1486 aa12.07□□□□□ -0.48
APP-209ENST00000440126 KIF27Q86VH2 1401 aa12.06□□□□□ -0.48
APP-209ENST00000440126 APLP2Q06481 763 aa12.06□□□□□ -0.48
APP-209ENST00000440126 FGD5Q6ZNL6 1462 aa12.04□□□□□ -0.48
APP-209ENST00000440126 FANCD2Q9BXW9 1451 aa12.04□□□□□ -0.48
APP-209ENST00000440126 P3H3Q8IVL6 736 aa12.03□□□□□ -0.48
APP-209ENST00000440126 PRXQ9BXM0 1461 aa12.02□□□□□ -0.49
APP-209ENST00000440126 RAD54L2Q9Y4B4 1467 aa12.02□□□□□ -0.49
APP-209ENST00000440126 BCL11AQ9H165 835 aa12.02□□□□□ -0.49
APP-209ENST00000440126 VPS8Q8N3P4 1428 aa12.01□□□□□ -0.49
APP-209ENST00000440126 ZEB1P37275 1124 aaPredicted RBP12.01□□□□□ -0.49
APP-209ENST00000440126 KANK4Q5T7N3 995 aaPredicted RBP11.99□□□□□ -0.49
APP-209ENST00000440126 IGF1RP08069 1367 aa11.98□□□□□ -0.49
APP-209ENST00000440126 ATP1B4Q9UN42 357 aaPredicted RBP11.97□□□□□ -0.49
APP-209ENST00000440126 PRDM2Q13029 1718 aa11.97□□□□□ -0.49
APP-209ENST00000440126 ARAP1Q96P48 1450 aa11.97□□□□□ -0.49
APP-209ENST00000440126 CARMIL1Q5VZK9 1371 aa11.94□□□□□ -0.5
APP-209ENST00000440126 ITGAEP38570 1179 aa11.94□□□□□ -0.5
APP-209ENST00000440126 ERICH3Q5RHP9 1530 aa11.93□□□□□ -0.5
APP-209ENST00000440126 TOPBP1Q92547 1522 aa11.92□□□□□ -0.5
APP-209ENST00000440126 TDRD9Q8NDG6 1382 aaKnown RBP11.91□□□□□ -0.5
APP-209ENST00000440126 POLA1P09884 1462 aaPredicted RBP11.91□□□□□ -0.5
APP-209ENST00000440126 ARHGAP35Q9NRY4 1499 aa11.9□□□□□ -0.5
APP-209ENST00000440126 URB2Q14146 1524 aaKnown RBP11.88□□□□□ -0.51
APP-209ENST00000440126 DNMBPQ6XZF7 1577 aa11.86□□□□□ -0.51
APP-209ENST00000440126 KIF21AQ7Z4S6 1674 aa11.83□□□□□ -0.52
APP-209ENST00000440126 FHOD3Q2V2M9 1422 aa11.82□□□□□ -0.52
APP-209ENST00000440126 LAMC3Q9Y6N6 1575 aa11.8□□□□□ -0.52
APP-209ENST00000440126 ABCA10Q8WWZ4 1543 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms