RNA–Protein interactions for RNA: ENST00000354192.7

APP-203, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best) BASIC

Gene APP, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-203ENST00000354192 NISCHQ9Y2I1 1504 aa37.37■■■■□ 3.57
APP-203ENST00000354192 SHROOM4Q9ULL8 1493 aa32.88■■■□□ 2.85
APP-203ENST00000354192 DCAF8L2P0C7V8 631 aa32.69■■■□□ 2.82
APP-203ENST00000354192 SUPT5HO00267 1087 aaKnown RBP32.19■■■□□ 2.74
APP-203ENST00000354192 ZCCHC6Q5VYS8 1495 aaKnown RBP31.41■■■□□ 2.62
APP-203ENST00000354192 CCDC180Q9P1Z9 1646 aa31.36■■■□□ 2.61
APP-203ENST00000354192 CHIC1Q5VXU3 224 aa30.56■■■□□ 2.48
APP-203ENST00000354192 ABCC9O60706 1549 aa30.5■■■□□ 2.47
APP-203ENST00000354192 SCRIBQ14160 1630 aa30.21■■■□□ 2.43
APP-203ENST00000354192 MYO15BQ96JP2 1530 aa30.18■■■□□ 2.42
APP-203ENST00000354192 EHMT2Q96KQ7 1210 aa30.15■■■□□ 2.42
APP-203ENST00000354192 DCAF1Q9Y4B6 1507 aa30.12■■■□□ 2.41
APP-203ENST00000354192 LOC105371045A0A1W2PR82 267 aa30.09■■■□□ 2.41
APP-203ENST00000354192 FAM9AQ8IZU1 332 aaPredicted RBP29.96■■■□□ 2.39
APP-203ENST00000354192 PCGF6Q9BYE7 350 aa29.82■■■□□ 2.36
APP-203ENST00000354192 TRIM41Q8WV44 630 aa29.7■■■□□ 2.35
APP-203ENST00000354192 RSF1Q96T23 1441 aaPredicted RBP29.68■■■□□ 2.34
APP-203ENST00000354192 CECR2Q9BXF3 1484 aa29.55■■■□□ 2.32
APP-203ENST00000354192 PABPN1Q86U42 306 aaKnown RBP eCLIP29.49■■■□□ 2.31
APP-203ENST00000354192 NACADO15069 1562 aa29.36■■■□□ 2.29
APP-203ENST00000354192 RB1CC1Q8TDY2 1594 aa29.32■■■□□ 2.28
APP-203ENST00000354192 MROH2BQ7Z745 1585 aa29.24■■■□□ 2.27
APP-203ENST00000354192 PPARGC1BQ86YN6 1023 aaKnown RBP29.18■■■□□ 2.26
APP-203ENST00000354192 HRCP23327 699 aa29.09■■■□□ 2.25
APP-203ENST00000354192 WIZO95785 1651 aa29.04■■■□□ 2.24
APP-203ENST00000354192 TTBK1Q5TCY1 1321 aaPredicted RBP29■■■□□ 2.23
APP-203ENST00000354192 TRIM26Q12899 539 aaPredicted RBP28.83■■■□□ 2.21
APP-203ENST00000354192 BAZ1AQ9NRL2 1556 aaPredicted RBP28.69■■■□□ 2.18
APP-203ENST00000354192 RANGAP1P46060 587 aaPredicted RBP28.61■■■□□ 2.17
APP-203ENST00000354192 ABCC8Q09428 1581 aa28.54■■■□□ 2.16
APP-203ENST00000354192 UBTFP17480 764 aaKnown RBP28.54■■■□□ 2.16
APP-203ENST00000354192 CCDC88BA6NC98 1476 aa28.52■■■□□ 2.16
APP-203ENST00000354192 SMARCA4P51532 1647 aa28.45■■■□□ 2.15
APP-203ENST00000354192 UNC13AQ9UPW8 1703 aa28.42■■■□□ 2.14
APP-203ENST00000354192 TOP2AP11388 1531 aaKnown RBP28.33■■■□□ 2.13
APP-203ENST00000354192 SOGA1O94964 1423 aa28.3■■■□□ 2.12
APP-203ENST00000354192 BICRAQ9NZM4 1560 aa28.23■■■□□ 2.11
APP-203ENST00000354192 SMARCA2P51531 1590 aa28.23■■■□□ 2.11
APP-203ENST00000354192 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.22■■■□□ 2.11
APP-203ENST00000354192 CSRNP3Q8WYN3 585 aa28.21■■■□□ 2.11
APP-203ENST00000354192 RUSC2Q8N2Y8 1516 aa28.17■■■□□ 2.1
APP-203ENST00000354192 CCER1Q8TC90 406 aaPredicted RBP28.09■■■□□ 2.09
APP-203ENST00000354192 BAZ1BQ9UIG0 1483 aaKnown RBP28.04■■■□□ 2.08
APP-203ENST00000354192 WRNQ14191 1432 aaPredicted RBP eCLIP28.01■■■□□ 2.08
APP-203ENST00000354192 ATAD2BQ9ULI0 1458 aa27.99■■■□□ 2.07
APP-203ENST00000354192 CEP162Q5TB80 1403 aa27.94■■■□□ 2.06
APP-203ENST00000354192 EIF4G1Q04637 1599 aaKnown RBP27.93■■■□□ 2.06
APP-203ENST00000354192 ZEB1P37275 1124 aaPredicted RBP27.9■■■□□ 2.06
APP-203ENST00000354192 HNRNPUL2Q1KMD3 747 aaKnown RBP27.83■■■□□ 2.05
APP-203ENST00000354192 APLP2Q06481 763 aa27.8■■■□□ 2.04
APP-203ENST00000354192 TNIKQ9UKE5 1360 aa27.72■■■□□ 2.03
APP-203ENST00000354192 SYNJ1O43426 1573 aa27.67■■■□□ 2.02
APP-203ENST00000354192 GOLGA3Q08378 1498 aa27.64■■■□□ 2.01
APP-203ENST00000354192 EEA1Q15075 1411 aa27.58■■■□□ 2.01
APP-203ENST00000354192 CLIP1P30622 1438 aa27.54■■■□□ 2
APP-203ENST00000354192 PEG3Q9GZU2 1588 aa27.52■■■□□ 2
APP-203ENST00000354192 RAPGEF2Q9Y4G8 1499 aa27.52■■■□□ 2
APP-203ENST00000354192 ATP1B4Q9UN42 357 aaPredicted RBP27.47■■□□□ 1.99
APP-203ENST00000354192 CEP164Q9UPV0 1460 aa27.47■■□□□ 1.99
APP-203ENST00000354192 ITGAEP38570 1179 aa27.44■■□□□ 1.98
APP-203ENST00000354192 P3H3Q8IVL6 736 aa27.36■■□□□ 1.97
APP-203ENST00000354192 NCAPD3P42695 1498 aa27.32■■□□□ 1.96
APP-203ENST00000354192 KANK4Q5T7N3 995 aaPredicted RBP27.21■■□□□ 1.95
APP-203ENST00000354192 DNAJC5BQ9UF47 199 aa27.17■■□□□ 1.94
APP-203ENST00000354192 DIEXFQ68CQ4 756 aaKnown RBP27.17■■□□□ 1.94
APP-203ENST00000354192 CUX1P39880 1505 aa27.17■■□□□ 1.94
APP-203ENST00000354192 KIF27Q86VH2 1401 aa27.17■■□□□ 1.94
APP-203ENST00000354192 VPS8Q8N3P4 1428 aa27.17■■□□□ 1.94
APP-203ENST00000354192 TOP2BQ02880 1626 aa27.14■■□□□ 1.94
APP-203ENST00000354192 CUX2O14529 1486 aa27.12■■□□□ 1.93
APP-203ENST00000354192 CFTRP13569 1480 aa27.09■■□□□ 1.93
APP-203ENST00000354192 CADPSQ9ULU8 1353 aa27.08■■□□□ 1.93
APP-203ENST00000354192 HMGXB3Q12766 1538 aa27.08■■□□□ 1.93
APP-203ENST00000354192 KIF21BO75037 1637 aa27.07■■□□□ 1.92
APP-203ENST00000354192 YTHDC1Q96MU7 727 aaKnown RBP27.06■■□□□ 1.92
APP-203ENST00000354192 CC2D2AQ9P2K1 1620 aa26.96■■□□□ 1.91
APP-203ENST00000354192 NESP48681 1621 aa26.96■■□□□ 1.91
APP-203ENST00000354192 PRXQ9BXM0 1461 aa26.94■■□□□ 1.9
APP-203ENST00000354192 FAM50AQ14320 339 aaKnown RBP26.92■■□□□ 1.9
APP-203ENST00000354192 CARMIL1Q5VZK9 1371 aa26.92■■□□□ 1.9
APP-203ENST00000354192 ARAP1Q96P48 1450 aa26.91■■□□□ 1.9
APP-203ENST00000354192 IGF1RP08069 1367 aa26.91■■□□□ 1.9
APP-203ENST00000354192 ZNF316A6NFI3 1004 aaPredicted RBP26.89■■□□□ 1.89
APP-203ENST00000354192 FGD5Q6ZNL6 1462 aa26.88■■□□□ 1.89
APP-203ENST00000354192 RAD54L2Q9Y4B4 1467 aa26.86■■□□□ 1.89
APP-203ENST00000354192 BIVM-ERCC5R4GMW8 1640 aa26.86■■□□□ 1.89
APP-203ENST00000354192 FANCD2Q9BXW9 1451 aa26.84■■□□□ 1.89
APP-203ENST00000354192 ARID3CA6NKF2 412 aa26.83■■□□□ 1.88
APP-203ENST00000354192 SCAF1Q9H7N4 1312 aaKnown RBP26.78■■□□□ 1.88
APP-203ENST00000354192 TDRD9Q8NDG6 1382 aaKnown RBP26.77■■□□□ 1.88
APP-203ENST00000354192 NEUROD1Q13562 356 aa26.74■■□□□ 1.87
APP-203ENST00000354192 ARHGAP35Q9NRY4 1499 aa26.73■■□□□ 1.87
APP-203ENST00000354192 ERICH3Q5RHP9 1530 aa26.7■■□□□ 1.87
APP-203ENST00000354192 MIER1Q8N108 512 aa26.65■■□□□ 1.86
APP-203ENST00000354192 FHOD3Q2V2M9 1422 aa26.62■■□□□ 1.85
APP-203ENST00000354192 CCNB3Q8WWL7 1395 aa26.6■■□□□ 1.85
APP-203ENST00000354192 CENPBP07199 599 aaPredicted RBP26.59■■□□□ 1.85
APP-203ENST00000354192 ACIN1Q9UKV3 1341 aaKnown RBP26.56■■□□□ 1.84
APP-203ENST00000354192 POLA1P09884 1462 aaPredicted RBP26.54■■□□□ 1.84
APP-203ENST00000354192 GTF3C3Q9Y5Q9 886 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms