RNA–Protein interactions for RNA: ENST00000495212.1

HDGF-209, Transcript of heparin binding growth factor, humanhuman

TSL 3

Gene HDGF, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGF-209ENST00000495212 NISCHQ9Y2I1 1504 aa49.61■■■■■ 5.53
HDGF-209ENST00000495212 CCDC180Q9P1Z9 1646 aa44.31■■■■■ 4.68
HDGF-209ENST00000495212 ABCC9O60706 1549 aa44.19■■■■■ 4.66
HDGF-209ENST00000495212 RB1CC1Q8TDY2 1594 aa42.05■■■■■ 4.32
HDGF-209ENST00000495212 DCAF8L2P0C7V8 631 aa41.89■■■■■ 4.3
HDGF-209ENST00000495212 NACADO15069 1562 aa41.81■■■■■ 4.28
HDGF-209ENST00000495212 MYO15BQ96JP2 1530 aa41.26■■■■■ 4.2
HDGF-209ENST00000495212 DNAJC5BQ9UF47 199 aa41.25■■■■■ 4.19
HDGF-209ENST00000495212 UNC13AQ9UPW8 1703 aa41.24■■■■■ 4.19
HDGF-209ENST00000495212 PABPN1Q86U42 306 aaKnown RBP eCLIP41.24■■■■■ 4.19
HDGF-209ENST00000495212 ZCCHC6Q5VYS8 1495 aaKnown RBP41.17■■■■■ 4.18
HDGF-209ENST00000495212 BICRAQ9NZM4 1560 aa40.91■■■■■ 4.14
HDGF-209ENST00000495212 DCAF1Q9Y4B6 1507 aa40.89■■■■■ 4.14
HDGF-209ENST00000495212 SCRIBQ14160 1630 aa40.56■■■■■ 4.08
HDGF-209ENST00000495212 SHROOM4Q9ULL8 1493 aa40.15■■■■■ 4.02
HDGF-209ENST00000495212 CC2D2AQ9P2K1 1620 aa39.88■■■■□ 3.97
HDGF-209ENST00000495212 EIF4G1Q04637 1599 aaKnown RBP39.84■■■■□ 3.97
HDGF-209ENST00000495212 CECR2Q9BXF3 1484 aa39.7■■■■□ 3.95
HDGF-209ENST00000495212 SMARCA4P51532 1647 aa38.65■■■■□ 3.78
HDGF-209ENST00000495212 NCAPD3P42695 1498 aa38.62■■■■□ 3.77
HDGF-209ENST00000495212 ATAD2BQ9ULI0 1458 aa38.6■■■■□ 3.77
HDGF-209ENST00000495212 BAZ1AQ9NRL2 1556 aaPredicted RBP38.44■■■■□ 3.74
HDGF-209ENST00000495212 SMARCA2P51531 1590 aa38.44■■■■□ 3.74
HDGF-209ENST00000495212 HMGXB3Q12766 1538 aa38.34■■■■□ 3.73
HDGF-209ENST00000495212 MROH2BQ7Z745 1585 aa38.31■■■■□ 3.72
HDGF-209ENST00000495212 BAZ1BQ9UIG0 1483 aaKnown RBP38.23■■■■□ 3.71
HDGF-209ENST00000495212 PEG3Q9GZU2 1588 aa38.19■■■■□ 3.7
HDGF-209ENST00000495212 NESP48681 1621 aa38.08■■■■□ 3.69
HDGF-209ENST00000495212 ERCC6Q03468 1493 aa38.05■■■■□ 3.68
HDGF-209ENST00000495212 WIZO95785 1651 aa37.89■■■■□ 3.66
HDGF-209ENST00000495212 CUX2O14529 1486 aa37.8■■■■□ 3.64
HDGF-209ENST00000495212 LAMC3Q9Y6N6 1575 aa37.69■■■■□ 3.62
HDGF-209ENST00000495212 RSF1Q96T23 1441 aaPredicted RBP37.59■■■■□ 3.61
HDGF-209ENST00000495212 KIF21AQ7Z4S6 1674 aa37.56■■■■□ 3.6
HDGF-209ENST00000495212 THOC2Q8NI27 1593 aaKnown RBP37.54■■■■□ 3.6
HDGF-209ENST00000495212 DNAJC5Q9H3Z4 198 aa37.51■■■■□ 3.6
HDGF-209ENST00000495212 CADPSQ9ULU8 1353 aa37.49■■■■□ 3.59
HDGF-209ENST00000495212 PDS5BQ9NTI5 1447 aa37.46■■■■□ 3.59
HDGF-209ENST00000495212 TOP2AP11388 1531 aaKnown RBP37.33■■■■□ 3.57
HDGF-209ENST00000495212 MRC2Q9UBG0 1479 aa37.16■■■■□ 3.54
HDGF-209ENST00000495212 CFTRP13569 1480 aa37.12■■■■□ 3.53
HDGF-209ENST00000495212 FANCD2Q9BXW9 1451 aa37.09■■■■□ 3.53
HDGF-209ENST00000495212 CEP164Q9UPV0 1460 aa37.07■■■■□ 3.53
HDGF-209ENST00000495212 WDR62O43379 1518 aa37.05■■■■□ 3.52
HDGF-209ENST00000495212 CCDC88BA6NC98 1476 aa36.96■■■■□ 3.51
HDGF-209ENST00000495212 URB2Q14146 1524 aaKnown RBP36.81■■■■□ 3.48
HDGF-209ENST00000495212 PRDM2Q13029 1718 aa36.79■■■■□ 3.48
HDGF-209ENST00000495212 TOPBP1Q92547 1522 aa36.44■■■■□ 3.42
HDGF-209ENST00000495212 ZNF608Q9ULD9 1512 aaPredicted RBP36.34■■■■□ 3.41
HDGF-209ENST00000495212 IFT140Q96RY7 1462 aa36.31■■■■□ 3.4
HDGF-209ENST00000495212 DNMBPQ6XZF7 1577 aa36.3■■■■□ 3.4
HDGF-209ENST00000495212 SUPT5HO00267 1087 aaKnown RBP36.27■■■■□ 3.4
HDGF-209ENST00000495212 ABCC8Q09428 1581 aa36.25■■■■□ 3.39
HDGF-209ENST00000495212 OSCARQ8IYS5 282 aa36.19■■■■□ 3.38
HDGF-209ENST00000495212 TRIM41Q8WV44 630 aa36.11■■■■□ 3.37
HDGF-209ENST00000495212 EIF4G3O43432 1585 aaKnown RBP36.09■■■■□ 3.37
HDGF-209ENST00000495212 TARBP1Q13395 1621 aaKnown RBP36.08■■■■□ 3.37
HDGF-209ENST00000495212 POLA1P09884 1462 aaPredicted RBP36.08■■■■□ 3.37
HDGF-209ENST00000495212 AQRO60306 1485 aaKnown RBP eCLIP36.04■■■■□ 3.363e-7■■■■■ 41.1
HDGF-209ENST00000495212 RAD54L2Q9Y4B4 1467 aa36.03■■■■□ 3.36
HDGF-209ENST00000495212 CUX1P39880 1505 aa35.95■■■■□ 3.35
HDGF-209ENST00000495212 SOGA1O94964 1423 aa35.92■■■■□ 3.34
HDGF-209ENST00000495212 FGD5Q6ZNL6 1462 aa35.92■■■■□ 3.34
HDGF-209ENST00000495212 TDRD9Q8NDG6 1382 aaKnown RBP35.88■■■■□ 3.33
HDGF-209ENST00000495212 CHD1O14646 1710 aa35.82■■■■□ 3.32
HDGF-209ENST00000495212 FBLN2P98095 1184 aa35.75■■■■□ 3.31
HDGF-209ENST00000495212 RIMBP3CA6NJZ7 1639 aa35.74■■■■□ 3.31
HDGF-209ENST00000495212 RIMBP3BA6NNM3 1639 aa35.74■■■■□ 3.31
HDGF-209ENST00000495212 RIMBP3Q9UFD9 1639 aa35.74■■■■□ 3.31
HDGF-209ENST00000495212 SNAPC4Q5SXM2 1469 aa35.66■■■■□ 3.3
HDGF-209ENST00000495212 WDR97A6NE52 1622 aa35.63■■■■□ 3.29
HDGF-209ENST00000495212 ARHGEF11O15085 1522 aa35.62■■■■□ 3.29
HDGF-209ENST00000495212 GRIN2BQ13224 1484 aa35.54■■■■□ 3.28
HDGF-209ENST00000495212 PBRM1Q86U86 1689 aa35.49■■■■□ 3.27
HDGF-209ENST00000495212 GAPVD1Q14C86 1478 aa35.48■■■■□ 3.27
HDGF-209ENST00000495212 CHMP7Q8WUX9 453 aaPredicted RBP35.48■■■■□ 3.27
HDGF-209ENST00000495212 MAGI1Q96QZ7 1491 aaPredicted RBP35.48■■■■□ 3.27
HDGF-209ENST00000495212 ABCA10Q8WWZ4 1543 aa35.47■■■■□ 3.27
HDGF-209ENST00000495212 SYNJ1O43426 1573 aa35.45■■■■□ 3.27
HDGF-209ENST00000495212 WRNQ14191 1432 aaPredicted RBP eCLIP35.43■■■■□ 3.26
HDGF-209ENST00000495212 ABCA5Q8WWZ7 1642 aa35.42■■■■□ 3.26
HDGF-209ENST00000495212 CYB5RLQ6IPT4 315 aa35.41■■■■□ 3.26
HDGF-209ENST00000495212 BIVM-ERCC5R4GMW8 1640 aa35.41■■■■□ 3.26
HDGF-209ENST00000495212 TOP2BQ02880 1626 aa35.4■■■■□ 3.26
HDGF-209ENST00000495212 SYNJ2O15056 1496 aa35.38■■■■□ 3.25
HDGF-209ENST00000495212 CLASP1Q7Z460 1538 aa35.35■■■■□ 3.25
HDGF-209ENST00000495212 ARAP1Q96P48 1450 aa35.33■■■■□ 3.25
HDGF-209ENST00000495212 ADAMTS12P58397 1594 aa35.13■■■■□ 3.21
HDGF-209ENST00000495212 GRIN2AQ12879 1464 aa35.09■■■■□ 3.21
HDGF-209ENST00000495212 CEP170Q5SW79 1584 aa35.02■■■■□ 3.2
HDGF-209ENST00000495212 FHAD1B1AJZ9 1412 aa35.01■■■■□ 3.2
HDGF-209ENST00000495212 ERICH3Q5RHP9 1530 aa35.01■■■■□ 3.19
HDGF-209ENST00000495212 NUP160Q12769 1436 aa34.96■■■■□ 3.19
HDGF-209ENST00000495212 ERCC6L2Q5T890 1561 aa34.94■■■■□ 3.18
HDGF-209ENST00000495212 TRHP20396 242 aaPredicted RBP34.91■■■■□ 3.18
HDGF-209ENST00000495212 SHROOM2Q13796 1616 aa34.77■■■■□ 3.16
HDGF-209ENST00000495212 IGF1RP08069 1367 aa34.71■■■■□ 3.15
HDGF-209ENST00000495212 KIF27Q86VH2 1401 aa34.7■■■■□ 3.15
HDGF-209ENST00000495212 JPH4Q96JJ6 628 aa34.65■■■■□ 3.14
HDGF-209ENST00000495212 PRG4Q92954 1404 aaPredicted RBP34.64■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms