RNA–Protein interactions for RNA: ENST00000538239.5

LRP6-203, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best)

Gene LRP6, Length 7,812 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-203ENST00000538239 DCAF8L2P0C7V8 631 aa9.76□□□□□ -0.85
LRP6-203ENST00000538239 NISCHQ9Y2I1 1504 aa9.27□□□□□ -0.93
LRP6-203ENST00000538239 SUPT5HO00267 1087 aaKnown RBP9.03□□□□□ -0.96
LRP6-203ENST00000538239 SHROOM4Q9ULL8 1493 aa9.01□□□□□ -0.97
LRP6-203ENST00000538239 EHMT2Q96KQ7 1210 aa8.85□□□□□ -0.99
LRP6-203ENST00000538239 FAM9AQ8IZU1 332 aaPredicted RBP8.55□□□□□ -1.04
LRP6-203ENST00000538239 APLP2Q06481 763 aa8.54□□□□□ -1.04
LRP6-203ENST00000538239 RANGAP1P46060 587 aaPredicted RBP8.51□□□□□ -1.05
LRP6-203ENST00000538239 TTBK1Q5TCY1 1321 aaPredicted RBP8.49□□□□□ -1.05
LRP6-203ENST00000538239 ATP1B4Q9UN42 357 aaPredicted RBP8.43□□□□□ -1.06
LRP6-203ENST00000538239 TRIM41Q8WV44 630 aa8.34□□□□□ -1.07
LRP6-203ENST00000538239 UBTFP17480 764 aaKnown RBP8.29□□□□□ -1.08
LRP6-203ENST00000538239 ABCC9O60706 1549 aa8.25□□□□□ -1.09
LRP6-203ENST00000538239 PCGF6Q9BYE7 350 aa8.21□□□□□ -1.09
LRP6-203ENST00000538239 PABPN1Q86U42 306 aaKnown RBP eCLIP8.19□□□□□ -1.1
LRP6-203ENST00000538239 MYT1LQ9UL68 1186 aa8.18□□□□□ -1.1
LRP6-203ENST00000538239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.16□□□□□ -1.1
LRP6-203ENST00000538239 HNRNPUL2Q1KMD3 747 aaKnown RBP8.16□□□□□ -1.1
LRP6-203ENST00000538239 PPARGC1BQ86YN6 1023 aaKnown RBP8.13□□□□□ -1.11
LRP6-203ENST00000538239 CCER1Q8TC90 406 aaPredicted RBP8.1□□□□□ -1.11
LRP6-203ENST00000538239 PELP1Q8IZL8 1130 aaKnown RBP8.09□□□□□ -1.12
LRP6-203ENST00000538239 CHIC1Q5VXU3 224 aa8.06□□□□□ -1.12
LRP6-203ENST00000538239 ITGAEP38570 1179 aa8.04□□□□□ -1.12
LRP6-203ENST00000538239 FBLN2P98095 1184 aa7.96□□□□□ -1.13
LRP6-203ENST00000538239 POLR3GLQ9BT43 218 aa7.95□□□□□ -1.14
LRP6-203ENST00000538239 ZEB1P37275 1124 aaPredicted RBP7.93□□□□□ -1.14
LRP6-203ENST00000538239 LOC105371045A0A1W2PR82 267 aa7.93□□□□□ -1.14
LRP6-203ENST00000538239 CNGB1Q14028 1251 aaPredicted RBP7.88□□□□□ -1.15
LRP6-203ENST00000538239 YTHDC1Q96MU7 727 aaKnown RBP7.88□□□□□ -1.15
LRP6-203ENST00000538239 SLC4A1APQ9BWU0 796 aaKnown RBP7.88□□□□□ -1.15
LRP6-203ENST00000538239 SCRIBQ14160 1630 aa7.85□□□□□ -1.15
LRP6-203ENST00000538239 CENPBP07199 599 aaPredicted RBP7.85□□□□□ -1.15
LRP6-203ENST00000538239 FAM50AQ14320 339 aaKnown RBP7.85□□□□□ -1.15
LRP6-203ENST00000538239 TRIM26Q12899 539 aaPredicted RBP7.82□□□□□ -1.16
LRP6-203ENST00000538239 ERICH6Q7L0X2 663 aa7.82□□□□□ -1.16
LRP6-203ENST00000538239 ARID3CA6NKF2 412 aa7.81□□□□□ -1.16
LRP6-203ENST00000538239 NEFLP07196 543 aa7.8□□□□□ -1.16
LRP6-203ENST00000538239 TRIM52Q96A61 297 aa7.8□□□□□ -1.16
LRP6-203ENST00000538239 P3H3Q8IVL6 736 aa7.78□□□□□ -1.16
LRP6-203ENST00000538239 BCANQ96GW7 911 aa7.73□□□□□ -1.17
LRP6-203ENST00000538239 PLPPR3Q6T4P5 718 aa7.73□□□□□ -1.17
LRP6-203ENST00000538239 NEUROD1Q13562 356 aa7.71□□□□□ -1.17
LRP6-203ENST00000538239 ZNF326Q5BKZ1 582 aaKnown RBP7.71□□□□□ -1.18
LRP6-203ENST00000538239 ZNF777Q9ULD5 760 aaPredicted RBP7.7□□□□□ -1.18
LRP6-203ENST00000538239 CCDC180Q9P1Z9 1646 aa7.68□□□□□ -1.18
LRP6-203ENST00000538239 RB1CC1Q8TDY2 1594 aa7.65□□□□□ -1.19
LRP6-203ENST00000538239 NPM1P06748 294 aaKnown RBP eCLIP7.64□□□□□ -1.19
LRP6-203ENST00000538239 ESF1Q9H501 851 aaKnown RBP7.64□□□□□ -1.19
LRP6-203ENST00000538239 ZCCHC6Q5VYS8 1495 aaKnown RBP7.63□□□□□ -1.19
LRP6-203ENST00000538239 HRCP23327 699 aa7.62□□□□□ -1.19
LRP6-203ENST00000538239 SLC24A1O60721 1099 aa7.62□□□□□ -1.19
LRP6-203ENST00000538239 CSRNP3Q8WYN3 585 aa7.61□□□□□ -1.19
LRP6-203ENST00000538239 CDK11AQ9UQ88 783 aaPredicted RBP7.59□□□□□ -1.19
LRP6-203ENST00000538239 DAXXQ9UER7 740 aaPredicted RBP7.58□□□□□ -1.2
LRP6-203ENST00000538239 STAG3Q9UJ98 1225 aa7.58□□□□□ -1.2
LRP6-203ENST00000538239 CHGAP10645 457 aaKnown RBP7.58□□□□□ -1.2
LRP6-203ENST00000538239 CHMP7Q8WUX9 453 aaPredicted RBP7.58□□□□□ -1.2
LRP6-203ENST00000538239 CLSPNQ9HAW4 1339 aa7.53□□□□□ -1.2
LRP6-203ENST00000538239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.52□□□□□ -1.211e-6■■■■□ 19.8
LRP6-203ENST00000538239 ERCC6Q03468 1493 aa7.52□□□□□ -1.21
LRP6-203ENST00000538239 BCL11AQ9H165 835 aa7.51□□□□□ -1.21
LRP6-203ENST00000538239 DIEXFQ68CQ4 756 aaKnown RBP7.5□□□□□ -1.21
LRP6-203ENST00000538239 NACADO15069 1562 aa7.5□□□□□ -1.21
LRP6-203ENST00000538239 CHIC2Q9UKJ5 165 aa7.49□□□□□ -1.21
LRP6-203ENST00000538239 SENP3Q9H4L4 574 aaPredicted RBP7.49□□□□□ -1.21
LRP6-203ENST00000538239 KCNH8Q96L42 1107 aa7.49□□□□□ -1.21
LRP6-203ENST00000538239 NEFMP07197 916 aa7.48□□□□□ -1.21
LRP6-203ENST00000538239 BAZ1BQ9UIG0 1483 aaKnown RBP7.48□□□□□ -1.21
LRP6-203ENST00000538239 ANP32CO43423 234 aa7.48□□□□□ -1.21
LRP6-203ENST00000538239 SCAF1Q9H7N4 1312 aaKnown RBP7.46□□□□□ -1.22
LRP6-203ENST00000538239 CANXP27824 592 aaKnown RBP7.45□□□□□ -1.22
LRP6-203ENST00000538239 ZBTB47Q9UFB7 747 aaPredicted RBP7.45□□□□□ -1.22
LRP6-203ENST00000538239 ARID4BQ4LE39 1312 aaPredicted RBP7.43□□□□□ -1.22
LRP6-203ENST00000538239 PLEKHG5O94827 1062 aa7.43□□□□□ -1.22
LRP6-203ENST00000538239 ZNF316A6NFI3 1004 aaPredicted RBP7.43□□□□□ -1.22
LRP6-203ENST00000538239 TSPY4P0CV99 314 aa7.42□□□□□ -1.22
LRP6-203ENST00000538239 TSPY10P0CW01 314 aa7.42□□□□□ -1.22
LRP6-203ENST00000538239 MTUS2Q5JR59 1369 aa7.42□□□□□ -1.22
LRP6-203ENST00000538239 TRHP20396 242 aaPredicted RBP7.4□□□□□ -1.22
LRP6-203ENST00000538239 KDM2AQ9Y2K7 1162 aa7.4□□□□□ -1.22
LRP6-203ENST00000538239 TONSLQ96HA7 1378 aa7.39□□□□□ -1.23
LRP6-203ENST00000538239 ZBTB7CA1YPR0 619 aa7.39□□□□□ -1.23
LRP6-203ENST00000538239 A0A0G2JS52 829 aa7.39□□□□□ -1.23
LRP6-203ENST00000538239 PLEKHD1A6NEE1 506 aa7.38□□□□□ -1.23
LRP6-203ENST00000538239 PPP1R15AO75807 674 aaPredicted RBP7.37□□□□□ -1.23
LRP6-203ENST00000538239 RSF1Q96T23 1441 aaPredicted RBP7.37□□□□□ -1.23
LRP6-203ENST00000538239 C14orf37Q86TY3 774 aa7.37□□□□□ -1.23
LRP6-203ENST00000538239 RRP7BPQ9NSQ0 103 aa7.36□□□□□ -1.23
LRP6-203ENST00000538239 EIF4G1Q04637 1599 aaKnown RBP7.35□□□□□ -1.23
LRP6-203ENST00000538239 WRNQ14191 1432 aaPredicted RBP eCLIP7.34□□□□□ -1.23
LRP6-203ENST00000538239 CLIP1P30622 1438 aa7.34□□□□□ -1.23
LRP6-203ENST00000538239 MYT1Q01538 1121 aa7.34□□□□□ -1.23
LRP6-203ENST00000538239 DCAF1Q9Y4B6 1507 aa7.32□□□□□ -1.24
LRP6-203ENST00000538239 SALL2Q9Y467 1007 aaPredicted RBP7.32□□□□□ -1.24
LRP6-203ENST00000538239 BAZ1AQ9NRL2 1556 aaPredicted RBP7.32□□□□□ -1.24
LRP6-203ENST00000538239 KIF27Q86VH2 1401 aa7.32□□□□□ -1.24
LRP6-203ENST00000538239 GOLGA3Q08378 1498 aa7.3□□□□□ -1.24
LRP6-203ENST00000538239 CECR2Q9BXF3 1484 aa7.3□□□□□ -1.24
LRP6-203ENST00000538239 HAP1P54257 671 aaPredicted RBP7.3□□□□□ -1.24
LRP6-203ENST00000538239 CFDP1Q9UEE9 299 aaPredicted RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 185 ms