RNA–Protein interactions for RNA: ENST00000346798.7

APP-201, Transcript of amyloid beta precursor protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene APP, Length 3,467 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-201ENST00000346798 NISCHQ9Y2I1 1504 aa23.67■■□□□ 1.38
APP-201ENST00000346798 SHROOM4Q9ULL8 1493 aa20.89■□□□□ 0.93
APP-201ENST00000346798 SUPT5HO00267 1087 aaKnown RBP20.59■□□□□ 0.89
APP-201ENST00000346798 DCAF8L2P0C7V8 631 aa20.28■□□□□ 0.84
APP-201ENST00000346798 ZCCHC6Q5VYS8 1495 aaKnown RBP20■□□□□ 0.79
APP-201ENST00000346798 CHIC1Q5VXU3 224 aa19.85■□□□□ 0.77
APP-201ENST00000346798 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
APP-201ENST00000346798 CCDC180Q9P1Z9 1646 aa19.79■□□□□ 0.76
APP-201ENST00000346798 PCGF6Q9BYE7 350 aa19.66■□□□□ 0.74
APP-201ENST00000346798 HRCP23327 699 aa19.56■□□□□ 0.72
APP-201ENST00000346798 LOC105371045A0A1W2PR82 267 aa19.48■□□□□ 0.71
APP-201ENST00000346798 PPARGC1BQ86YN6 1023 aaKnown RBP19.39■□□□□ 0.7
APP-201ENST00000346798 EHMT2Q96KQ7 1210 aa19.16■□□□□ 0.66
APP-201ENST00000346798 DCAF1Q9Y4B6 1507 aa19.15■□□□□ 0.66
APP-201ENST00000346798 FAM9AQ8IZU1 332 aaPredicted RBP19.11■□□□□ 0.65
APP-201ENST00000346798 TRIM41Q8WV44 630 aa19.01■□□□□ 0.63
APP-201ENST00000346798 TRIM26Q12899 539 aaPredicted RBP19■□□□□ 0.63
APP-201ENST00000346798 SCRIBQ14160 1630 aa18.99■□□□□ 0.63
APP-201ENST00000346798 RSF1Q96T23 1441 aaPredicted RBP18.9■□□□□ 0.62
APP-201ENST00000346798 ABCC9O60706 1549 aa18.89■□□□□ 0.62
APP-201ENST00000346798 RB1CC1Q8TDY2 1594 aa18.77■□□□□ 0.59
APP-201ENST00000346798 CECR2Q9BXF3 1484 aa18.64■□□□□ 0.57
APP-201ENST00000346798 ZEB1P37275 1124 aaPredicted RBP18.57■□□□□ 0.56
APP-201ENST00000346798 TTBK1Q5TCY1 1321 aaPredicted RBP18.55■□□□□ 0.56
APP-201ENST00000346798 MROH2BQ7Z745 1585 aa18.52■□□□□ 0.56
APP-201ENST00000346798 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.44■□□□□ 0.54
APP-201ENST00000346798 WIZO95785 1651 aa18.44■□□□□ 0.54
APP-201ENST00000346798 NACADO15069 1562 aa18.37■□□□□ 0.53
APP-201ENST00000346798 CCER1Q8TC90 406 aaPredicted RBP18.36■□□□□ 0.53
APP-201ENST00000346798 SCAF1Q9H7N4 1312 aaKnown RBP18.24■□□□□ 0.51
APP-201ENST00000346798 ABCC8Q09428 1581 aa18.2■□□□□ 0.5
APP-201ENST00000346798 UBTFP17480 764 aaKnown RBP18.17■□□□□ 0.5
APP-201ENST00000346798 BAZ1AQ9NRL2 1556 aaPredicted RBP18.16■□□□□ 0.5
APP-201ENST00000346798 CCDC88BA6NC98 1476 aa18.15■□□□□ 0.5
APP-201ENST00000346798 PABPN1Q86U42 306 aaKnown RBP eCLIP18.11■□□□□ 0.49
APP-201ENST00000346798 SOGA1O94964 1423 aa18.09■□□□□ 0.49
APP-201ENST00000346798 CEP162Q5TB80 1403 aa18.04■□□□□ 0.48
APP-201ENST00000346798 RANGAP1P46060 587 aaPredicted RBP18.03■□□□□ 0.48
APP-201ENST00000346798 DIEXFQ68CQ4 756 aaKnown RBP18.03■□□□□ 0.48
APP-201ENST00000346798 CSRNP3Q8WYN3 585 aa18.02■□□□□ 0.47
APP-201ENST00000346798 EIF4G1Q04637 1599 aaKnown RBP18.01■□□□□ 0.47
APP-201ENST00000346798 RUSC2Q8N2Y8 1516 aa18■□□□□ 0.47
APP-201ENST00000346798 TOP2AP11388 1531 aaKnown RBP18■□□□□ 0.47
APP-201ENST00000346798 NEUROD1Q13562 356 aa17.99■□□□□ 0.47
APP-201ENST00000346798 SMARCA4P51532 1647 aa17.97■□□□□ 0.47
APP-201ENST00000346798 SMARCA2P51531 1590 aa17.95■□□□□ 0.46
APP-201ENST00000346798 HNRNPUL2Q1KMD3 747 aaKnown RBP17.94■□□□□ 0.46
APP-201ENST00000346798 ACIN1Q9UKV3 1341 aaKnown RBP17.94■□□□□ 0.46
APP-201ENST00000346798 TNIKQ9UKE5 1360 aa17.9■□□□□ 0.46
APP-201ENST00000346798 YTHDC1Q96MU7 727 aaKnown RBP17.87■□□□□ 0.45
APP-201ENST00000346798 WRNQ14191 1432 aaPredicted RBP eCLIP17.87■□□□□ 0.45
APP-201ENST00000346798 GTF3C3Q9Y5Q9 886 aa17.86■□□□□ 0.45
APP-201ENST00000346798 PELP1Q8IZL8 1130 aaKnown RBP17.85■□□□□ 0.45
APP-201ENST00000346798 CENPBP07199 599 aaPredicted RBP17.84■□□□□ 0.45
APP-201ENST00000346798 UNC13AQ9UPW8 1703 aa17.82■□□□□ 0.44
APP-201ENST00000346798 GOLGA3Q08378 1498 aa17.78■□□□□ 0.44
APP-201ENST00000346798 APLP2Q06481 763 aa17.77■□□□□ 0.44
APP-201ENST00000346798 ZNF316A6NFI3 1004 aaPredicted RBP17.77■□□□□ 0.43
APP-201ENST00000346798 EEA1Q15075 1411 aa17.75■□□□□ 0.43
APP-201ENST00000346798 CLIP1P30622 1438 aa17.69■□□□□ 0.42
APP-201ENST00000346798 MIER1Q8N108 512 aa17.64■□□□□ 0.42
APP-201ENST00000346798 SYNJ1O43426 1573 aa17.64■□□□□ 0.41
APP-201ENST00000346798 CEP164Q9UPV0 1460 aa17.63■□□□□ 0.41
APP-201ENST00000346798 BICRAQ9NZM4 1560 aa17.61■□□□□ 0.41
APP-201ENST00000346798 RAPGEF2Q9Y4G8 1499 aa17.59■□□□□ 0.41
APP-201ENST00000346798 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
APP-201ENST00000346798 VPS8Q8N3P4 1428 aa17.54■□□□□ 0.4
APP-201ENST00000346798 ATAD2BQ9ULI0 1458 aa17.53■□□□□ 0.4
APP-201ENST00000346798 ITGAEP38570 1179 aa17.49■□□□□ 0.39
APP-201ENST00000346798 KIF21BO75037 1637 aa17.48■□□□□ 0.39
APP-201ENST00000346798 KANK4Q5T7N3 995 aaPredicted RBP17.45■□□□□ 0.38
APP-201ENST00000346798 PEG3Q9GZU2 1588 aa17.43■□□□□ 0.38
APP-201ENST00000346798 DHX57Q6P158 1386 aaKnown RBP17.3■□□□□ 0.36
APP-201ENST00000346798 TOP2BQ02880 1626 aa17.3■□□□□ 0.36
APP-201ENST00000346798 ARAP1Q96P48 1450 aa17.27■□□□□ 0.36
APP-201ENST00000346798 ATP1B4Q9UN42 357 aaPredicted RBP17.26■□□□□ 0.35
APP-201ENST00000346798 PRXQ9BXM0 1461 aa17.23■□□□□ 0.35
APP-201ENST00000346798 KIF27Q86VH2 1401 aa17.21■□□□□ 0.35
APP-201ENST00000346798 P3H3Q8IVL6 736 aa17.2■□□□□ 0.34
APP-201ENST00000346798 CUX1P39880 1505 aa17.19■□□□□ 0.34
APP-201ENST00000346798 CCNB3Q8WWL7 1395 aa17.16■□□□□ 0.34
APP-201ENST00000346798 ERICH3Q5RHP9 1530 aa17.16■□□□□ 0.34
APP-201ENST00000346798 BIVM-ERCC5R4GMW8 1640 aa17.15■□□□□ 0.34
APP-201ENST00000346798 FAM50AQ14320 339 aaKnown RBP17.15■□□□□ 0.34
APP-201ENST00000346798 CLSPNQ9HAW4 1339 aa17.15■□□□□ 0.34
APP-201ENST00000346798 KCNH8Q96L42 1107 aa17.13■□□□□ 0.33
APP-201ENST00000346798 ARHGAP35Q9NRY4 1499 aa17.12■□□□□ 0.33
APP-201ENST00000346798 CUX2O14529 1486 aa17.09■□□□□ 0.33
APP-201ENST00000346798 RRBP1Q9P2E9 1410 aaKnown RBP17.09■□□□□ 0.33
APP-201ENST00000346798 SIN3AQ96ST3 1273 aa17.08■□□□□ 0.33
APP-201ENST00000346798 HIRIP3Q9BW71 556 aaPredicted RBP17.08■□□□□ 0.32
APP-201ENST00000346798 RAB3GAP2Q9H2M9 1393 aa17.08■□□□□ 0.32
APP-201ENST00000346798 SUPT16HQ9Y5B9 1047 aaKnown RBP17.07■□□□□ 0.32
APP-201ENST00000346798 NCAPD3P42695 1498 aa17.06■□□□□ 0.32
APP-201ENST00000346798 DDX10Q13206 875 aaKnown RBP17.04■□□□□ 0.32
APP-201ENST00000346798 IGF1RP08069 1367 aa17.02■□□□□ 0.32
APP-201ENST00000346798 BCANQ96GW7 911 aa17.02■□□□□ 0.32
APP-201ENST00000346798 CFTRP13569 1480 aa17.02■□□□□ 0.32
APP-201ENST00000346798 CARMIL1Q5VZK9 1371 aa17■□□□□ 0.31
APP-201ENST00000346798 HMGXB3Q12766 1538 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms