RNA–Protein interactions for RNA: ENST00000348990.9

APP-202, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best) BASIC

Gene APP, Length 3,355 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-202ENST00000348990 NISCHQ9Y2I1 1504 aa33.96■■■■□ 3.03
APP-202ENST00000348990 SHROOM4Q9ULL8 1493 aa30.53■■■□□ 2.48
APP-202ENST00000348990 SUPT5HO00267 1087 aaKnown RBP30.38■■■□□ 2.45
APP-202ENST00000348990 HRCP23327 699 aa29.69■■■□□ 2.34
APP-202ENST00000348990 PCGF6Q9BYE7 350 aa29.61■■■□□ 2.33
APP-202ENST00000348990 DCAF8L2P0C7V8 631 aa29.43■■■□□ 2.3
APP-202ENST00000348990 CHIC1Q5VXU3 224 aa29.36■■■□□ 2.29
APP-202ENST00000348990 PPARGC1BQ86YN6 1023 aaKnown RBP29.34■■■□□ 2.29
APP-202ENST00000348990 MYO15BQ96JP2 1530 aa29.2■■■□□ 2.27
APP-202ENST00000348990 LOC105371045A0A1W2PR82 267 aa28.88■■■□□ 2.21
APP-202ENST00000348990 ZCCHC6Q5VYS8 1495 aaKnown RBP28.73■■■□□ 2.19
APP-202ENST00000348990 TRIM26Q12899 539 aaPredicted RBP28.51■■■□□ 2.15
APP-202ENST00000348990 DCAF1Q9Y4B6 1507 aa28.39■■■□□ 2.13
APP-202ENST00000348990 EHMT2Q96KQ7 1210 aa28.31■■■□□ 2.12
APP-202ENST00000348990 FAM9AQ8IZU1 332 aaPredicted RBP28.22■■■□□ 2.11
APP-202ENST00000348990 ZEB1P37275 1124 aaPredicted RBP28.14■■■□□ 2.1
APP-202ENST00000348990 PELP1Q8IZL8 1130 aaKnown RBP28.07■■■□□ 2.08
APP-202ENST00000348990 CCDC180Q9P1Z9 1646 aa28.05■■■□□ 2.08
APP-202ENST00000348990 TRIM41Q8WV44 630 aa28.01■■■□□ 2.07
APP-202ENST00000348990 SCAF1Q9H7N4 1312 aaKnown RBP27.91■■■□□ 2.06
APP-202ENST00000348990 CCER1Q8TC90 406 aaPredicted RBP27.58■■■□□ 2.01
APP-202ENST00000348990 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.57■■■□□ 2
APP-202ENST00000348990 TTBK1Q5TCY1 1321 aaPredicted RBP27.51■■□□□ 1.99
APP-202ENST00000348990 ACIN1Q9UKV3 1341 aaKnown RBP27.39■■□□□ 1.97
APP-202ENST00000348990 NEUROD1Q13562 356 aa27.39■■□□□ 1.97
APP-202ENST00000348990 RSF1Q96T23 1441 aaPredicted RBP27.35■■□□□ 1.97
APP-202ENST00000348990 GTF3C3Q9Y5Q9 886 aa27.3■■□□□ 1.96
APP-202ENST00000348990 CENPBP07199 599 aaPredicted RBP27.3■■□□□ 1.96
APP-202ENST00000348990 DIEXFQ68CQ4 756 aaKnown RBP27.27■■□□□ 1.96
APP-202ENST00000348990 ABCC9O60706 1549 aa27.19■■□□□ 1.94
APP-202ENST00000348990 SCRIBQ14160 1630 aa27.16■■□□□ 1.94
APP-202ENST00000348990 RB1CC1Q8TDY2 1594 aa27.11■■□□□ 1.93
APP-202ENST00000348990 YTHDC1Q96MU7 727 aaKnown RBP27.1■■□□□ 1.93
APP-202ENST00000348990 MYT1Q01538 1121 aa26.82■■□□□ 1.88
APP-202ENST00000348990 UBTFP17480 764 aaKnown RBP26.77■■□□□ 1.88
APP-202ENST00000348990 CECR2Q9BXF3 1484 aa26.76■■□□□ 1.87
APP-202ENST00000348990 ZNF316A6NFI3 1004 aaPredicted RBP26.75■■□□□ 1.87
APP-202ENST00000348990 HNRNPUL2Q1KMD3 747 aaKnown RBP26.66■■□□□ 1.86
APP-202ENST00000348990 MROH2BQ7Z745 1585 aa26.6■■□□□ 1.85
APP-202ENST00000348990 MIER1Q8N108 512 aa26.57■■□□□ 1.84
APP-202ENST00000348990 CEP162Q5TB80 1403 aa26.49■■□□□ 1.83
APP-202ENST00000348990 RANGAP1P46060 587 aaPredicted RBP26.48■■□□□ 1.83
APP-202ENST00000348990 WIZO95785 1651 aa26.46■■□□□ 1.83
APP-202ENST00000348990 CSRNP3Q8WYN3 585 aa26.4■■□□□ 1.82
APP-202ENST00000348990 APLP2Q06481 763 aa26.36■■□□□ 1.81
APP-202ENST00000348990 CCDC88BA6NC98 1476 aa26.35■■□□□ 1.81
APP-202ENST00000348990 ABCC8Q09428 1581 aa26.34■■□□□ 1.81
APP-202ENST00000348990 SOGA1O94964 1423 aa26.33■■□□□ 1.81
APP-202ENST00000348990 WRNQ14191 1432 aaPredicted RBP eCLIP26.28■■□□□ 1.8
APP-202ENST00000348990 TNIKQ9UKE5 1360 aa26.26■■□□□ 1.79
APP-202ENST00000348990 RUSC2Q8N2Y8 1516 aa26.13■■□□□ 1.77
APP-202ENST00000348990 BAZ1AQ9NRL2 1556 aaPredicted RBP26.07■■□□□ 1.76
APP-202ENST00000348990 NACADO15069 1562 aa26.06■■□□□ 1.76
APP-202ENST00000348990 GOLGA3Q08378 1498 aa25.99■■□□□ 1.75
APP-202ENST00000348990 EEA1Q15075 1411 aa25.95■■□□□ 1.74
APP-202ENST00000348990 SUPT16HQ9Y5B9 1047 aaKnown RBP25.93■■□□□ 1.74
APP-202ENST00000348990 CLIP1P30622 1438 aa25.92■■□□□ 1.74
APP-202ENST00000348990 EIF4G1Q04637 1599 aaKnown RBP25.88■■□□□ 1.73
APP-202ENST00000348990 ITGAEP38570 1179 aa25.86■■□□□ 1.73
APP-202ENST00000348990 TOP2AP11388 1531 aaKnown RBP25.86■■□□□ 1.73
APP-202ENST00000348990 BCANQ96GW7 911 aa25.84■■□□□ 1.73
APP-202ENST00000348990 PABPN1Q86U42 306 aaKnown RBP eCLIP25.8■■□□□ 1.72
APP-202ENST00000348990 SMARCA2P51531 1590 aa25.77■■□□□ 1.72
APP-202ENST00000348990 CEP164Q9UPV0 1460 aa25.73■■□□□ 1.71
APP-202ENST00000348990 VPS8Q8N3P4 1428 aa25.71■■□□□ 1.71
APP-202ENST00000348990 CLSPNQ9HAW4 1339 aa25.69■■□□□ 1.7
APP-202ENST00000348990 TSHZ2Q9NRE2 1034 aa25.69■■□□□ 1.7
APP-202ENST00000348990 SMARCA4P51532 1647 aa25.65■■□□□ 1.7
APP-202ENST00000348990 KCNH8Q96L42 1107 aa25.62■■□□□ 1.69
APP-202ENST00000348990 DHX57Q6P158 1386 aaKnown RBP25.6■■□□□ 1.69
APP-202ENST00000348990 ANP32EQ9BTT0 268 aa25.59■■□□□ 1.69
APP-202ENST00000348990 KANK4Q5T7N3 995 aaPredicted RBP25.57■■□□□ 1.68
APP-202ENST00000348990 RAPGEF2Q9Y4G8 1499 aa25.56■■□□□ 1.68
APP-202ENST00000348990 FKBP8Q14318 412 aa25.56■■□□□ 1.68
APP-202ENST00000348990 NEFLP07196 543 aa25.49■■□□□ 1.67
APP-202ENST00000348990 DDX10Q13206 875 aaKnown RBP25.49■■□□□ 1.67
APP-202ENST00000348990 SYNJ1O43426 1573 aa25.4■■□□□ 1.66
APP-202ENST00000348990 KIF21BO75037 1637 aa25.4■■□□□ 1.66
APP-202ENST00000348990 HIRIP3Q9BW71 556 aaPredicted RBP25.39■■□□□ 1.66
APP-202ENST00000348990 TRIM52Q96A61 297 aa25.36■■□□□ 1.65
APP-202ENST00000348990 ATP1B4Q9UN42 357 aaPredicted RBP25.34■■□□□ 1.65
APP-202ENST00000348990 BAZ1BQ9UIG0 1483 aaKnown RBP25.32■■□□□ 1.64
APP-202ENST00000348990 BCL11AQ9H165 835 aa25.29■■□□□ 1.64
APP-202ENST00000348990 FAM50AQ14320 339 aaKnown RBP25.28■■□□□ 1.64
APP-202ENST00000348990 SIN3AQ96ST3 1273 aa25.27■■□□□ 1.64
APP-202ENST00000348990 CCNB3Q8WWL7 1395 aa25.25■■□□□ 1.63
APP-202ENST00000348990 RBM19Q9Y4C8 960 aaKnown RBP25.21■■□□□ 1.63
APP-202ENST00000348990 ANP32CO43423 234 aa25.19■■□□□ 1.62
APP-202ENST00000348990 RAB3GAP2Q9H2M9 1393 aa25.17■■□□□ 1.62
APP-202ENST00000348990 ARAP1Q96P48 1450 aa25.13■■□□□ 1.61
APP-202ENST00000348990 ERICH6Q7L0X2 663 aa25.12■■□□□ 1.61
APP-202ENST00000348990 P3H3Q8IVL6 736 aa25.08■■□□□ 1.61
APP-202ENST00000348990 IRX6P78412 446 aaPredicted RBP25.08■■□□□ 1.6
APP-202ENST00000348990 RRBP1Q9P2E9 1410 aaKnown RBP25.06■■□□□ 1.6
APP-202ENST00000348990 ATAD2BQ9ULI0 1458 aa25■■□□□ 1.59
APP-202ENST00000348990 UNC13AQ9UPW8 1703 aa24.97■■□□□ 1.59
APP-202ENST00000348990 SETD5Q9C0A6 1442 aa24.96■■□□□ 1.59
APP-202ENST00000348990 HNRNPUQ00839 825 aaKnown RBP eCLIP24.96■■□□□ 1.59
APP-202ENST00000348990 PRXQ9BXM0 1461 aa24.96■■□□□ 1.59
APP-202ENST00000348990 PPP1R15AO75807 674 aaPredicted RBP24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms